Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751402.1:1996435-2002052[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.052 3.5 8.8 0.4 1 23 75 98 75 98 0.96

2 17 0.29 20 6.5 2.9 3 23 171 191 169 191 0.96

3 17 0.0012 0.079 14.0 0.2 1 23 195 217 195 217 0.97

4 17 0.013 0.86 10.8 0.1 1 23 224 247 224 247 0.97

5 17 0.016 1.1 10.4 1.1 2 23 255 277 254 277 0.92

6 17 5.5e-06 0.00037 21.4 0.6 2 23 283 305 282 305 0.96

7 17 0.44 30 5.9 0.7 1 23 311 334 311 334 0.92

8 17 0.00016 0.011 16.7 3.9 1 23 340 363 340 363 0.98

9 17 0.4 27 6.1 0.2 2 23 680 702 679 702 0.95

10 17 0.0011 0.074 14.1 0.8 1 23 724 746 724 746 0.98

11 17 0.0028 0.19 12.8 0.3 1 23 750 772 750 772 0.97

12 17 0.25 17 6.7 1.9 1 23 777 800 777 800 0.92

13 17 0.04 2.7 9.2 0.8 2 23 808 830 807 830 0.94

14 17 2.4e-06 0.00016 22.5 2.6 2 23 838 860 837 860 0.97

15 17 1.4e-06 9.1e-05 23.3 2.9 1 23 866 888 866 888 0.99

16 17 3.3e-05 0.0022 18.9 0.8 1 23 894 916 894 916 0.98

17 17 0.018 1.2 10.3 1.6 1 23 923 946 923 946 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.052	3.5	8.8	0.4	1	23	75	98	75	98	0.96
2	17	0.29	20	6.5	2.9	3	23	171	191	169	191	0.96
3	17	0.0012	0.079	14.0	0.2	1	23	195	217	195	217	0.97
4	17	0.013	0.86	10.8	0.1	1	23	224	247	224	247	0.97
5	17	0.016	1.1	10.4	1.1	2	23	255	277	254	277	0.92
6	17	5.5e-06	0.00037	21.4	0.6	2	23	283	305	282	305	0.96
7	17	0.44	30	5.9	0.7	1	23	311	334	311	334	0.92
8	17	0.00016	0.011	16.7	3.9	1	23	340	363	340	363	0.98
9	17	0.4	27	6.1	0.2	2	23	680	702	679	702	0.95
10	17	0.0011	0.074	14.1	0.8	1	23	724	746	724	746	0.98
11	17	0.0028	0.19	12.8	0.3	1	23	750	772	750	772	0.97
12	17	0.25	17	6.7	1.9	1	23	777	800	777	800	0.92
13	17	0.04	2.7	9.2	0.8	2	23	808	830	807	830	0.94
14	17	2.4e-06	0.00016	22.5	2.6	2	23	838	860	837	860	0.97
15	17	1.4e-06	9.1e-05	23.3	2.9	1	23	866	888	866	888	0.99
16	17	3.3e-05	0.0022	18.9	0.8	1	23	894	916	894	916	0.98
17	17	0.018	1.2	10.3	1.6	1	23	923	946	923	946	0.93

Sequence Information

Coding Sequence: ATGTTCGCGCACCAGCAGTCCCCTTGCCACGAACAGACTGAGCTCCCCTTTGTGTTCGTGCAAACACCGCCAACGATTGGAGCGCGGAGCGCGCACCGTTGCACGCTCCAGGAGCGTGAACTCGAAAAGCATCTGCCAGAGATGAAGAAGCAATGGCACAACCTGACAACTATCCTCATGCATTCAAACGCGACGCCTTTCAAGGATCGAAACGATGCAGGGTACATCTGCGCTTATTGCTACGAGTCCTACCCCGATCCGAACGTTCTTCGAGAGCATACCCACAGAGATCACAGTGACGAGAAACGCACCTACAAGTCAGGCTCGGCCGTCAACAATTTCATTGCTTACCTCGACATTGTTGACCTCAAATGCACCATCTGCGACAGCCCTAAACCAGATCTCAAGACGCTTATCGAACATTTAGTCGCCGCACATCAAAAGCAGTATTATCTCGGAGAGACAGACTACTTTATACCGTTCAAGCTGACGGATGAACAGCAGATGAACTGTTGCATCTGCTTCGAGCCCTACCATAACATGAAGCTGTTGATGCAACACATGAACGTTCATTACAGGAATTTTATCTGCACTATATGCGGAGCTGGCTTCGTAAACAGCTTCAGACTGCTGAGACATGAGACGACGCACGAAAAGAAGAAGTCTAGCTTTCCTTGTAAACAGTGCGGGGCTGTTTTCCCTGCAGACTCGAAGAGGAAGGCTCACATCAATACTGAACACAAGGGCATCGCTGGCGATAGTGTTTGCAGGATTTGCAAAGCTCGCTTCAAAAATTACTATCAAAAGACAAGGCATATGGTGCAGGTTCATAATGCCGAAGGCGTGAAATGCGAAGTGTGTGAGAAAAGATTCAACCTGAAATCGAATCTGATCTCTCATATGAGAAATGTTCATCTAAAGGAGCGACCATACGAATGCTCAGTTTGCAATATGGGTTTCTTTATAAAACGCCAGATGCTGTATCATTATATGGCAACTCATACGAATGAGCGTAATTTTAAATGCGAAGTCTGCGGGAAGGCTTACGCTACGCAATGTAGCAAAAGGAAGCATATGAAGAAAAATCATGGCATGGTTCCTAAGacAAAGAGCAAAGACCAGAATGTGGAAAAGAAGAAAGATGATAAGGAAAAGAGAAGTAAGAGCAAGGAAGTTAAAAAAACCGATGAAGCTAAGAAACGCAAGGGAGCTAAAGAAATAAAGAGTAACGAAGCAAATAAGGACCCTTCTAAAAGAGGGAAAGAAATAGAGGTTGATGAAACTGAACTATCAAACGAGAAGACTTCTGGTAAAAAAGTAAAGAAAGCTAAAAATGTAGACGATGGCAAAAAAGCAAAGGATAAACTTGATTCTGGCGATGTATCTAAAATTTCCAAGAAAAAAAAGAGTCGCAAAAATATTACTATAGATGATGATATAATAGTAATACCTGATGATGAATCACAAAGCGCCAAGAAGAAAGCGTCtgaaaacaagaaaaaatctaaaaaagatCAAGAGGCTGATGTGATTGAGATTGACGatgaaaaatcaaaaaaagccAATGAGAAAAAGCCAGTAAGTAAGAAAAGATCGATAAAATGCAGCCCACCTGAGTTTCTCGATGAAGACGCTCccaaaagaaaaaagaaaagcaCCGAGGTCAAAACCTCTAAAAAAGAcgacaaatataaaattattctcGATGCTATTTCTAAATTTGATCTTAAACAACACCGTGCTAATATGAAAATTCATCTGCGAACTCAAACAGATAAAGATTTAATCGCGTTTGACGTCCCTGAGTTAGATAAGCACCTGCACAATATACGAACGATCATGACGAACTCAAATGCCACCCCGATACAAAACCACAATGAAAGTGGCTTCACATGCTGTTTTTGCGTCGATCAGTACCTCACAGCTGCTGAGCTAAAAATACATACACTTGACAGTCACGGCGAAGAATCTATTGAAAGATTCAGACCAACGCTATCTGTATACTCTTATGTCGTCAAACTCGATATAACGTCCTTGCGTTGTGTGATATGCACTCGAAAAATTTTCACTCTCGAACTGCTCATAGACCACCTAGAGACCAAGCATGATAAAACGTTCTACAAggaaatcaaaaatcaaatacTGCCGTTTAAATTTCAAAGCGACATCTTTACTTGCGTCATTTGCGACCAAAAATTCGATCGTTTTATGCAGATGCAGTTGCATATGAGTGTACACTACAGGAATTATGAGTGCGACGAATGCAGCGCGACTTTCATCAACAAAGCCACCCTGAGATTTCATATCATCAGGCACATGACGGGCACTTTCACGTGCCGCTTCTGTGCCAAAACATACAACACAAAGGACAAACGAAATGTCCATGAGAAGGATGTTCATTTCAGTGGCCATAAACGAAACAAATGCACCTACTGCGATGAATTTTTCATCAGATACGTCAAGAAAATGGAACACATGGTGAAAGTTCACGGTCACGAAGAACGTGTCGTCAAGTGCAATAATTGCGACAAAACGTTCACAACCAAAGAAATGCTGACTAAGCACACGAAAAGAGACCATCTCAAGGAACGCAATTATAAATGCGAGATTTGTGATAAATGTTTCTTTAGTAACTATGGCTTGGGTAGGCATATTCGCACTCACTTGGTCACCAAGCCGTTCACCTGCGACGTTTGCCAAAGGAGCTTCAACCGTAAGGATAACTGGTTGGAGCATTCGCGTATACATACTGGGGAAAATGTTCGGTATAGCTGTGATCGCTGCGGCATGAATTTTCCACATATGGCCCGGTTGAGGAAGCATACCGCGCAGAAGCATAAGGAACTTGTGGGGCTGGTCTAA
Protein Sequence: MFAHQQSPCHEQTELPFVFVQTPPTIGARSAHRCTLQERELEKHLPEMKKQWHNLTTILMHSNATPFKDRNDAGYICAYCYESYPDPNVLREHTHRDHSDEKRTYKSGSAVNNFIAYLDIVDLKCTICDSPKPDLKTLIEHLVAAHQKQYYLGETDYFIPFKLTDEQQMNCCICFEPYHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLLRHETTHEKKKSSFPCKQCGAVFPADSKRKAHINTEHKGIAGDSVCRICKARFKNYYQKTRHMVQVHNAEGVKCEVCEKRFNLKSNLISHMRNVHLKERPYECSVCNMGFFIKRQMLYHYMATHTNERNFKCEVCGKAYATQCSKRKHMKKNHGMVPKTKSKDQNVEKKKDDKEKRSKSKEVKKTDEAKKRKGAKEIKSNEANKDPSKRGKEIEVDETELSNEKTSGKKVKKAKNVDDGKKAKDKLDSGDVSKISKKKKSRKNITIDDDIIVIPDDESQSAKKKASENKKKSKKDQEADVIEIDDEKSKKANEKKPVSKKRSIKCSPPEFLDEDAPKRKKKSTEVKTSKKDDKYKIILDAISKFDLKQHRANMKIHLRTQTDKDLIAFDVPELDKHLHNIRTIMTNSNATPIQNHNESGFTCCFCVDQYLTAAELKIHTLDSHGEESIERFRPTLSVYSYVVKLDITSLRCVICTRKIFTLELLIDHLETKHDKTFYKEIKNQILPFKFQSDIFTCVICDQKFDRFMQMQLHMSVHYRNYECDECSATFINKATLRFHIIRHMTGTFTCRFCAKTYNTKDKRNVHEKDVHFSGHKRNKCTYCDEFFIRYVKKMEHMVKVHGHEERVVKCNNCDKTFTTKEMLTKHTKRDHLKERNYKCEICDKCFFSNYGLGRHIRTHLVTKPFTCDVCQRSFNRKDNWLEHSRIHTGENVRYSCDRCGMNFPHMARLRKHTAQKHKELVGLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -