Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751403.1:6291233-6299699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0097 0.65 11.1 3.7 1 23 895 918 895 918 0.98

2 13 0.0015 0.1 13.7 0.3 2 23 923 944 922 944 0.96

3 13 0.0096 0.65 11.1 0.7 1 23 950 972 950 972 0.94

4 13 0.068 4.6 8.5 6.3 1 23 983 1005 983 1005 0.97

5 13 0.0047 0.32 12.1 0.1 2 23 1011 1033 1011 1033 0.96

6 13 0.0014 0.092 13.8 5.6 1 23 1039 1061 1039 1061 0.96

7 13 2e-05 0.0014 19.6 0.5 1 23 1066 1088 1066 1088 0.98

8 13 0.00055 0.037 15.1 2.1 3 23 1096 1116 1095 1116 0.98

9 13 2.3e-05 0.0015 19.4 2.0 1 23 1122 1144 1122 1144 0.98

10 13 0.00087 0.059 14.4 0.5 1 23 1150 1173 1150 1173 0.93

11 13 1.3e-05 0.0009 20.1 2.0 1 23 1179 1201 1179 1201 0.98

12 13 3e-05 0.002 19.0 0.4 1 23 1207 1230 1207 1230 0.97

13 13 5.4e-05 0.0036 18.2 0.2 1 23 1236 1259 1236 1259 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0097	0.65	11.1	3.7	1	23	895	918	895	918	0.98
2	13	0.0015	0.1	13.7	0.3	2	23	923	944	922	944	0.96
3	13	0.0096	0.65	11.1	0.7	1	23	950	972	950	972	0.94
4	13	0.068	4.6	8.5	6.3	1	23	983	1005	983	1005	0.97
5	13	0.0047	0.32	12.1	0.1	2	23	1011	1033	1011	1033	0.96
6	13	0.0014	0.092	13.8	5.6	1	23	1039	1061	1039	1061	0.96
7	13	2e-05	0.0014	19.6	0.5	1	23	1066	1088	1066	1088	0.98
8	13	0.00055	0.037	15.1	2.1	3	23	1096	1116	1095	1116	0.98
9	13	2.3e-05	0.0015	19.4	2.0	1	23	1122	1144	1122	1144	0.98
10	13	0.00087	0.059	14.4	0.5	1	23	1150	1173	1150	1173	0.93
11	13	1.3e-05	0.0009	20.1	2.0	1	23	1179	1201	1179	1201	0.98
12	13	3e-05	0.002	19.0	0.4	1	23	1207	1230	1207	1230	0.97
13	13	5.4e-05	0.0036	18.2	0.2	1	23	1236	1259	1236	1259	0.96

Sequence Information

Coding Sequence: ATGAGAGTgtttcttttgttattttttattaaaatcataGCGAATATAGAAGCAACTAAGCCAAAAAGTGTGAACCTAGCCCTCGAAACAGTGCTACAGTTCGACCAAAAAAACATTGCAGCTGACGTCAAGTTCTTAGACAACGTGCAAGAGTTCTTAGACAAAGTCAGAAGCGTCATACGCATCAACAATACGCGTCGCTTCGGCTCCGAAAACAAAAACATCAAGTTCACAGAGTTCATCAAATCTGTTATAGACATCCTCAAAAGTTATGACGACGACGCTCTCGAAGCTGTCTTTGCTGTATTTGATGATGAGATCAGAAAATATCATTATAGAGGATGCAAATTTTATGAGCTTGTCGAAGATCAAAATGTGAGAAGATTTGTAGCGAATAAATTAGAAGAAATCAAAGATAAACCTGCTGATAAACTTAGACAGAATCTAGACAACGCAATTGGTGTTATAGATGATGCTAAATTTAGTGGGGTGCGAACTGAATTTCTTGACTACGTAGACTCACTGTATAGACCAGATTCTACTGAGAAACTTAGAGAGTTTCTCAACAAGCTGCAGACTTACAGCAGTAAATCTAAACGAGCGAACTTAAATCTTATAAAAGTGGTACGAGATGGTATAAGATCCATTATATTTGACCATTATTCTAAACTCAATGCGAACGCAAGGAGAGATTTGAAGATTAAACTAGAAACTAGCTGGAGAAACTTCAAGTACCCCGAAAGAGTTGAGCACACTATATGGACAGTTCAATATACAAACagattttttgatttatttaacaGAAACTTTAATGATAATACTAAAGATATCAAACGAGAACTAACTACTCCAGTTGCTGCAAGTGCACAGACTACAAAGAGTGATTCTGAATCAAAAACCGATGAAGAAGACAAAGTACCGACTAACAAACATGAAAATagtgatgaaaaaaataaaaatactaaagaaGAAGTTTACTTTTACAAGGAAAAATACTACAGAACTAATGATAATGACTTTGAGAGTGATACAACTACAAtggtaacaaaatataaatatgtatcttCCGAATCAGACTCTGATAGTTCATCAGAATCTACCACAACTAAACCatacaaacacaaaacaaaacaacataaaCCGAAAACGATGGAAGCCACACAAAAGTATGTAAAACCAAAAAAACTGAGACATAATCCTAAGAAATCAACCTTTGTTACACTTTATGCGGATAGAATAACTGAAGATCATCCAAAGCGATTTAAGATTAAAGCGACAACACGAAAACCTAAACTATTTACGTTATGGGAAGAAGAAATTAAACATAAACCTCAAAAAGATTTGAAAACTCAAAACGAAAAGAGAAATAGAAAGCTGAAACGATCGAAAAGTAAGATTAATCTTAGAACGGAAGTTGATAAGCCAAGGGTCATAGCTGACTCAGATACGATCATCAATGTGAACAGAGCCGTGTCTTTGGAAGACATAAGTCTTAAGATAAACAGGGAAGTTTCCAAAGAGGAACACCAACACCAGACAAGGTCGACCCAAAGCAATTACAAACCAACTACTCGTAAGAAATACAGAAAACACCTTCCGAAAACTACACTTGAAGATGTACAATCAGGCATATCTATTGAAAGCTTTGAGATCCAAAGACGATCACTAGACCCACACCAAAAATCTGATCAGAATGAGACGCAGGTAAAGTTATTGAGAAGAATAAATCAATTAGAGAAACAATTGGAAcaagttaagataaaaaatattactaaaCCAACCACTGCTGAAACCAAATTCTCGTCACTTAAGTTCAGAGTTGGCACTACTGCAATTAAAAAGGTTAAAACCACAACACAGTCCACTACTATTGTAACTACAGTAACGGAACCTAGTGTTACTACTAAACATACTACATTTGAAACTACAACAGAGGCGCTAACAGACAGTATTGGGACCGATAAAAGTActactgaaaaagaaaatataacaGAAGCAATGGCCACGAAGACAGAGAGTGTACCGACCACATATAATATACAGAATACATCTGATTACGAGCAAACTGAAAATTACGATGAGGCTGATGAAGCGAACGATATTGGCGTAAACATAGATAATGATTTAGAAGATATAATGAAAAAATACAACGTAAGTGTCACGTCCGCAGCAACTGAACCGTTCAATATAGAAAAGTTTTTAGAAGAATCAAAGCCAGTTGAGAAAGAGAGTGCAGTGAAAGAAATCATGGAAAAAGACTTTAACAAATTATTTCAAGCTGTAACTGCAAAAGAAAATGGCACGACCACGTCCGTTGACCCGCTAAACACTGAAGATGGAAGGCCAAAGACTATTTGCTACATCTGTCGTTCCCAGTTGATGAAATGGCAGCGATTCTTTGAAACATCTCAAAGAGCTGAAAAGCTGCTAACAGATCTAGTTAGCAATGGCGGGCAGGTATCAGAAAAGGTAGCAATAGTGCTGAACCAAGGGCTGATACATTTATCAATATCGCCTACAAAATTGATATCCTTTGATGATCCAAATTGCATCTACGATGTCTCTCCGAAGGAAGAATTTGATACATTCGAGTTTCCAGATATTGAGAGAGTTGATATAGATGCTAGCAGTAACGATTATGTACCTTCTGAACACTTAAGTAAGGAGAAAAGTGACGCCAAGTATACATGTAGTTTGTGCAGCGAAACGTTCTTAAAGAAATCTCACATAAAAAGGCATATTAAGAGAATCCATAAAGAAAAGTTAATATGCAAGATATGTGAATCTGTATTCTCTACTAGTTTAGAACTTAAGGAACATTTAACAACACACCCAAAAGAACCTTACTACACTTGTATTCAATGCTACGGTATATTCTCCACTAAAACCGACTTAAACACACACATGGAAACCCATACACCTAATCATACACATAGACTTAAATCACACGAATGCAGCACCTGTCATAAAACATTCCTGTCTAAACTATGGCTTAAGAAGCATCTTAAACAGCACACAGACGCAAAACCAAAGTGCACGGAATGTGATCGGAATTTCCCTAATGTTATGGCGTTAAAAGGACATATAATAAGAGTACACAGTGGGTTAAAGCCATTCTCTTGCAGCTGCTGTGAGAAGAAATTCTCCAACAAACAGTACTTGAGACGGCATATGGAAATGCATAACGGAAAATCTTATATTTGTGATTCCTGTGGCATGGCGTTCTCACAACAAAAGGGGCTCAGACAACATAGAATGACTCACAACGCTGTGAAATCAAAAATATGCAACGTATGCAACAAAGCATTCTTGACAGGATCACATCTTAAATCACATATGAAAACTCACACGGGTATCAAGCCATACGCATGCAGTCGATGCACAAAGTCTTTTATTAGTAATCGCAGTTTAAAAGTGCATACGAGAACACACACAGGTGAAAAGCCATTTGTATGTAAGCCATGCAATCGAGCGTTCGCTCAAAAATATAATCTTCAACAGCACAATATCCGTATACACTCTGGCGTTAAACCACATACTTGTGACAGCTGTCAGATGTCATTCCCAACAAATTCTACCTTAAGAGTACACATTAGAACGCACACTGGTGAGAAACCGTATGTGTGTGAGGTGTGCAACCGAGCTTTCTCTGTCAACGGCAGCTTAAAGAGGCATTTTCAGAAAGTGCACAGTTGCTTAAAGCCGTTTGCTTGTGGTGTGTGTGATGTTAGTTTTACCAATAAGTCCGGGCTTAAAGGGCATGTGAGGAAATACCATGAGGTGAAGACATGTTTACAACCAGTGTGA
Protein Sequence: MRVFLLLFFIKIIANIEATKPKSVNLALETVLQFDQKNIAADVKFLDNVQEFLDKVRSVIRINNTRRFGSENKNIKFTEFIKSVIDILKSYDDDALEAVFAVFDDEIRKYHYRGCKFYELVEDQNVRRFVANKLEEIKDKPADKLRQNLDNAIGVIDDAKFSGVRTEFLDYVDSLYRPDSTEKLREFLNKLQTYSSKSKRANLNLIKVVRDGIRSIIFDHYSKLNANARRDLKIKLETSWRNFKYPERVEHTIWTVQYTNRFFDLFNRNFNDNTKDIKRELTTPVAASAQTTKSDSESKTDEEDKVPTNKHENSDEKNKNTKEEVYFYKEKYYRTNDNDFESDTTTMVTKYKYVSSESDSDSSSESTTTKPYKHKTKQHKPKTMEATQKYVKPKKLRHNPKKSTFVTLYADRITEDHPKRFKIKATTRKPKLFTLWEEEIKHKPQKDLKTQNEKRNRKLKRSKSKINLRTEVDKPRVIADSDTIINVNRAVSLEDISLKINREVSKEEHQHQTRSTQSNYKPTTRKKYRKHLPKTTLEDVQSGISIESFEIQRRSLDPHQKSDQNETQVKLLRRINQLEKQLEQVKIKNITKPTTAETKFSSLKFRVGTTAIKKVKTTTQSTTIVTTVTEPSVTTKHTTFETTTEALTDSIGTDKSTTEKENITEAMATKTESVPTTYNIQNTSDYEQTENYDEADEANDIGVNIDNDLEDIMKKYNVSVTSAATEPFNIEKFLEESKPVEKESAVKEIMEKDFNKLFQAVTAKENGTTTSVDPLNTEDGRPKTICYICRSQLMKWQRFFETSQRAEKLLTDLVSNGGQVSEKVAIVLNQGLIHLSISPTKLISFDDPNCIYDVSPKEEFDTFEFPDIERVDIDASSNDYVPSEHLSKEKSDAKYTCSLCSETFLKKSHIKRHIKRIHKEKLICKICESVFSTSLELKEHLTTHPKEPYYTCIQCYGIFSTKTDLNTHMETHTPNHTHRLKSHECSTCHKTFLSKLWLKKHLKQHTDAKPKCTECDRNFPNVMALKGHIIRVHSGLKPFSCSCCEKKFSNKQYLRRHMEMHNGKSYICDSCGMAFSQQKGLRQHRMTHNAVKSKICNVCNKAFLTGSHLKSHMKTHTGIKPYACSRCTKSFISNRSLKVHTRTHTGEKPFVCKPCNRAFAQKYNLQQHNIRIHSGVKPHTCDSCQMSFPTNSTLRVHIRTHTGEKPYVCEVCNRAFSVNGSLKRHFQKVHSCLKPFACGVCDVSFTNKSGLKGHVRKYHEVKTCLQPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -