Ealt006070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epirrhoe alternata
Gene Symbol
-
Assembly
GCA_963565295.1
Location
OY751380.1:10697701-10706092[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.5e-05 0.0037 18.2 5.3 1 23 294 316 294 316 0.97
2 12 1.8e-06 0.00012 22.9 3.1 1 23 322 345 322 345 0.97
3 12 0.042 2.8 9.1 4.1 1 23 356 379 356 379 0.97
4 12 1.4e-05 0.00093 20.1 1.6 3 23 387 407 386 407 0.98
5 12 0.0075 0.5 11.5 7.2 1 23 622 644 622 644 0.98
6 12 6.8e-07 4.6e-05 24.2 2.4 1 23 650 672 650 672 0.98
7 12 0.0028 0.19 12.8 7.6 1 23 678 701 678 701 0.98
8 12 0.00017 0.011 16.7 3.9 1 23 707 729 707 729 0.98
9 12 1.3e-05 0.00088 20.2 5.2 1 23 735 757 735 757 0.99
10 12 0.0016 0.11 13.6 3.2 1 23 762 784 762 784 0.98
11 12 0.0073 0.49 11.5 1.5 1 23 790 814 790 814 0.94
12 12 3.8e-07 2.5e-05 25.0 3.7 1 23 820 843 820 843 0.97

Sequence Information

Coding Sequence
ATGCACTGTTTAGCAAATACTCAAGTTTACGAATTCTTCGTGAAAATTACTAATAATAAGCTCTCTAAACTGAATGAAATATCTGATACAATGTGCTACCTCTGCTACTCACAGTTGCAGAAATGCTGTAGATTTATAAAAATGACTCAAAAAGCTGAAGTGATCCTGATGCAGCTCCTTAGTGATAAAGTAAAGATTACTCAAGAGACACTGTCAGCGCTTGATGAAAGAACTAGCTACGTGACAATTATTCAACAATCATCTTTCATAAACTCTAATAAATCTGTTAAAGATGAAGAAGCTGGCCGTTGCACTGATAAAGGTGTTTTTATAGACTCTCAAGTGCCTGAAAATGAAATTCTAATAACTGTTAAAGAGGAACCCACAGATACTGATGATCAAATGTCTATTGAAGATGGTTTTCTAGCAATAAAACATGAACCCATAGAACCTTTAGACAATAATCAAGAAAGCCGTGTACAGGGAAATAATGAACATGATTTGGAACTAAAtgaaagtaaaatcttaaaagaTCTCAAACCTGCTACACAATCTCAAATAGAAAACAACATAGTGGCATCAGAAACCAGCCCAAAATCTCAAATATATGAGGATTTGGCTTTGGAAAATGACACAAACACAAAATTTCCCATAACTCTAGAAGTACAACACATTAAAGAAGTTGTGTACTTAAAAGATCATAAAACAGTGACATCAGAATCAGTTAAAATGGAAATGGAGGACTCAAATGATAAAACAGACACTGAAAATAATGAGACCTATTTAAAAGAGAGACCAGATGAAAATCTATGTGAGGAATCCAGTTCAGTTTCACTCAAAGGAAAATCAAAGACAAATGTTTTTTCTGTAAAAGAAGCACATGTGTGTAGCACCTGTGGGAAGATTTTCCATAGCCCATATCATTTGCGGAGACACCTGGTGACGCACACAGGAGAAAAACGTTTTGTGTGCAAAATATGCAATAAAAAGTTCTCCCAGAAAGTTCACTTAACCCAACATCAAATAAAAGTACACACAAAGAAAGAAACTTCAGGAGAAAAACAGTATTTCTGTGAATTATGCGACGATAAGGCTTTTTGTAACAAGAATAGCTATAGAATGCACCTAAAAAGGCATAGTGGTGTGAGATTAGAGAATTGCACTTTATGTAGCTCCTCTTTTGTTAACAAGGGAGACCTGAAGAggcatatgagaactcacactggagagaAACCTTACACATGCAATCTCTCTACACTGGATGGAATATCTGAAACAATATGCTACCTCTGCTATTCACAGTTGCAAAAATGCTGGAGATTCATTAAAATGTCTCAGAAGGCTGGAGAGATCCTTACTCAGCTCCTAATTGATAAAGTACAGATAACTTCAGACACGATATCAGTGCTCGATAAAAGAACCAATTATGTGGCAATTACACAACAATCGTATAGCATAAATCCTGATGACTCTGTTATAGATGAAGGAGCTAACTGTTCTACTAAAGGTGTTTTTATAGACTCCCCAGTTCCTGACACAGAAATGAAAGAAACTGTCAAAGAAGAACCCTCAAATATTGATGATCAAATGACCTTTGAGTATAATTTTGTTGCAATAAAACATGAAGCCGAACCTTTAGTAGACACTAATCAACAAAGCTGTGCACAAGGAaataaagaacataattttgaaccaaaacaaaatactgttattaaagATCTCAAACTTGCTTTAAAATCTCAGATAGAAAAAAGCATAGTTGCATCAGAAACCAGCCTAAAATCTGAAACACTTGAGAATGATTTGGACGTAACAggaaaaaaatacactaaaaaAAGGATAAGAAATAGGCCCAAGAAAATTCATACCTGCCATATATGTGACATGAAGTTTTCATGCTACGCATACTTGTTGAGGCATATAAGAACACACACAGGAGAAAAACCTTATTCATGTGACAGCTGCAACAAGTCATTTTCTCAAAATGGGCATTTAATACAACATATGAGGTTGCACACTGGAGAGAAGCCTTATGAATGTCATATATGCAAAAACAAAGCATTCAATCACAGATATAATTATAAATCACACATGAAAAAGCATTTTGGAAAACCATCGCACACATGTGATATTTGCAAATCAGCATTCCATCAAAAGGGAGACTTGAAACGGCATATGATGTcacacacaggagaaaagccTTATACATGCGATATTTGTGATGTGAAATTCACACAAAGATGCCATTTAACAAAACATTTGCGGATCCATTCAAAAGAGCCTTATTCTTGCCAGTACTGCAATCAAAAATTTATGCAAAAGTTGGACTTTAATAATCACTTGACAACACACAAGGAGTTAGAAATGTTTGCATGTTCTTACGAAGGATGTACAAAATCATTCACCAAACAAAGTATTCTGAATAAACATTTTCAGTCACACATAGTAGGAAGACCATACCCCTGtaagaaatgtaaaaaaacattcaaacaaaAGGGGCACTTAACAAAACACATTATTACAGTACATGACAATGCTCAATCTGATGTAACACAGAAATCAATTCAACTAGAACTGAATCAAGATGAAATGAAGAACCAAAACAACTTTCAAGAGTTTAAGGATGAATATATCATACCATAA
Protein Sequence
MHCLANTQVYEFFVKITNNKLSKLNEISDTMCYLCYSQLQKCCRFIKMTQKAEVILMQLLSDKVKITQETLSALDERTSYVTIIQQSSFINSNKSVKDEEAGRCTDKGVFIDSQVPENEILITVKEEPTDTDDQMSIEDGFLAIKHEPIEPLDNNQESRVQGNNEHDLELNESKILKDLKPATQSQIENNIVASETSPKSQIYEDLALENDTNTKFPITLEVQHIKEVVYLKDHKTVTSESVKMEMEDSNDKTDTENNETYLKERPDENLCEESSSVSLKGKSKTNVFSVKEAHVCSTCGKIFHSPYHLRRHLVTHTGEKRFVCKICNKKFSQKVHLTQHQIKVHTKKETSGEKQYFCELCDDKAFCNKNSYRMHLKRHSGVRLENCTLCSSSFVNKGDLKRHMRTHTGEKPYTCNLSTLDGISETICYLCYSQLQKCWRFIKMSQKAGEILTQLLIDKVQITSDTISVLDKRTNYVAITQQSYSINPDDSVIDEGANCSTKGVFIDSPVPDTEMKETVKEEPSNIDDQMTFEYNFVAIKHEAEPLVDTNQQSCAQGNKEHNFEPKQNTVIKDLKLALKSQIEKSIVASETSLKSETLENDLDVTGKKYTKKRIRNRPKKIHTCHICDMKFSCYAYLLRHIRTHTGEKPYSCDSCNKSFSQNGHLIQHMRLHTGEKPYECHICKNKAFNHRYNYKSHMKKHFGKPSHTCDICKSAFHQKGDLKRHMMSHTGEKPYTCDICDVKFTQRCHLTKHLRIHSKEPYSCQYCNQKFMQKLDFNNHLTTHKELEMFACSYEGCTKSFTKQSILNKHFQSHIVGRPYPCKKCKKTFKQKGHLTKHIITVHDNAQSDVTQKSIQLELNQDEMKNQNNFQEFKDEYIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-