Ealt016135.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751393.1:417562-420095[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.9e-06 0.0006 20.7 0.5 1 21 68 88 68 89 0.94 2 18 0.4 27 6.0 0.0 2 19 114 131 113 133 0.94 3 18 4.6e-07 3.1e-05 24.7 1.2 2 23 160 181 160 181 0.97 4 18 0.00018 0.012 16.6 0.1 5 23 191 210 189 210 0.95 5 18 0.0011 0.072 14.1 0.7 1 23 216 238 216 238 0.95 6 18 0.00039 0.026 15.5 0.6 1 23 244 266 244 266 0.98 7 18 0.092 6.2 8.1 0.2 2 17 272 287 271 288 0.93 8 18 0.0034 0.23 12.6 0.6 1 23 388 410 388 410 0.98 9 18 0.025 1.7 9.9 1.2 1 23 416 439 416 439 0.90 10 18 0.0001 0.007 17.3 0.9 3 23 447 467 446 467 0.98 11 18 6.6e-06 0.00044 21.1 0.4 1 23 473 495 473 495 0.99 12 18 0.016 1.1 10.4 0.1 1 23 501 523 501 523 0.95 13 18 0.49 33 5.8 0.6 5 23 532 550 529 550 0.89 14 18 3.3e-05 0.0022 18.9 0.0 3 23 585 606 583 606 0.95 15 18 1.9e-05 0.0013 19.7 0.8 1 23 612 634 612 634 0.94 16 18 0.041 2.8 9.2 0.0 3 23 644 664 643 664 0.97 17 18 0.068 4.6 8.5 0.0 6 23 673 690 672 690 0.93 18 18 0.62 42 5.5 0.3 6 22 700 716 698 716 0.94
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGTCAGGCATGCCACTCTAGGACTTCCAGTGAGCAGTTCCACCTGCACTTGAGCTCGAATCATGGGGATCTTAAAAGTCGGGATGATATTGAAGAGTTCGTGAAAGAGCATGTCACTTTTGAGGAGACCCTGGAATCTGATGAAGATTGCTCTTCAGTCGGGTCCGCTGAAGCTTCTGTTGCGCATCGATTTGACTGTTCCATCTGTGACAAAGTATTTTCCTCACGCTCTCAACTCTCCCAACACTTTAGAGAACGTAACGCAAACGCTGATGAAATGTGCTGCGCTAAGGAAACTGAACAAGGACTAAAGACAGGATCACCTTTGCGATGTAAAGATTGCGACCACATCGCAGCAGATCCAGATGCTTTGGCTACTCATAATGCTCAGTGCGCTGCGTCCGACGTCACGGGGAAACGTCACGTGGAAACGAGAGAGGAGACGAACCAGAAGCGGATTCCGGCCGTCTGCCCCGACTGCAACCGCACCTTCTCCAACAAATACAACATGCTGAACCATATGAAGAGTCACGGAAAAGAGACAGTTAAATTCGACTGTGAATGTGGAAAGAGTTATTCCACTCGCGGGAATCTAGTAGCTCACAAACGGATAGCACATCTGGGCGAGCTGTCCCATAGGTGCGAGGAGTGCGGCAAAGGTTTTCCGACTCGCTCAGCCCGCGACGTTCATTCTCGCTTGCACACCGGCGTTCGCCCCTTTTCGTGTCCGGTTTGCGCGCGCTCCTTCCGCGCCAAGAACTCTCTCGACAAGCATCGCGAGACCCACGCGCCGCGCCGTCTGCAGTGCGCGCTCTGCGGGAGCAAGTTCCGGAGGCGAGCGCATCTCCGGTCCGCGGAGGGCTCGCCGGAGCGCGACTCGGACGCCTCCGAGCCGGCccccgccgccgcgcgccgcgccccgCTCGCCACGCTGCGCCGCGCGCTCCGCCACCTGCGCGACCATCACGCGGCGCACCACCTGCCTCCGCCCTCGCCCCCTCCCCCCGCGCCCCCCGGGACCACCTCGCCCGCGGGGGGCGAGCTCGACCTCGAGCGGTACGACGACCTGACGCGCGACAACATGCGGCGCGACCGCTTCGACCCGGAGACGCGCCGCGCGCTCGCCGAGGCGCGCGAGGGCCGCGCGCTCTACCGCTGCGGGCGCTGCGGGCGCGCGCTCGCCTCCGCGCACGCCTTCGTGCACCACGCGCGCATCCACACCGGCGAGCGGCCGCACGTCTGCCACCGCTGCGGGGCCGCCTTCCGCGCGCCGCAGGGGCTCGCGCGGCACGAGCACGAGACGCAcgagcggcgccggcgccgcgcctgCCGCCTCTGCCGCGAGACCTTCGCGAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGACCGCACCTTCGCGCAGTCCGGCGCGCTGCACGCGCACGCGCGTACGCACCAGCCGGGCCGCGCGCACgcctgcgcgcgctgcgggGCCGCCTTCCGCCTGCGCGCCGGCCTCGCGCGGCACGTGGCGCGGCACGCCGGCGCGCGCCCGCACCGCTGCGGCTGCGGCCGCGCCTTCGCCGCGCGGCACGAGCTCGCCGCGCACCTGCCGACGCAcgcggccgccgcgccgcaCGCGTGCGCGCTGGACCGCGCCGAGCTAGCGCCGCCGCCCCCGGAGCCCGCGCCGGGagctccgccgccgccgcggcgCTTCGGCTGCGCGACGTGCGGGCGCGTGTTCGCGGACGCGAGCAACCTGGCGCGGCACGCGCGCGCGCTGCACGCAGCCGGGCGCCCGCACGCGTGCGGCGCGTGCGGGCGCGCCTTCAGCCGCGCGGAGCACCTCCGCGCGCACATGTCGCAGCACGAGCCGGGCGGGGGCGCGGGGCTGCTGTGCGAAGCGTGCGGAGCGCGCGTGGCGTCGGCGGCGGCGCTGCGGTCGCACCGGCGTCGTCACGCGGGCGCGGCGTTGGCGTGCGCGTGCGGCGCGCGGTTCCGCCGCGCGGGGGAGCTGCGCGCGCACGCGACGGCGCACGCGGGGCTGCGGCCGCACGCGTGCTCCTGCGGGGCCGCGTTCCGCCTGCGCGCGCAGCTCACCCTGCACCGACGCAGGGCGGGGGCGCGAGAGGCGCCCTGCGGGCGGGGGGAAGGCCCCCCGGTGAGTTAG
- Protein Sequence
- MELVCQACHSRTSSEQFHLHLSSNHGDLKSRDDIEEFVKEHVTFEETLESDEDCSSVGSAEASVAHRFDCSICDKVFSSRSQLSQHFRERNANADEMCCAKETEQGLKTGSPLRCKDCDHIAADPDALATHNAQCAASDVTGKRHVETREETNQKRIPAVCPDCNRTFSNKYNMLNHMKSHGKETVKFDCECGKSYSTRGNLVAHKRIAHLGELSHRCEECGKGFPTRSARDVHSRLHTGVRPFSCPVCARSFRAKNSLDKHRETHAPRRLQCALCGSKFRRRAHLRSAEGSPERDSDASEPAPAAARRAPLATLRRALRHLRDHHAAHHLPPPSPPPPAPPGTTSPAGGELDLERYDDLTRDNMRRDRFDPETRRALAEAREGRALYRCGRCGRALASAHAFVHHARIHTGERPHVCHRCGAAFRAPQGLARHEHETHERRRRRACRLCRETFANEQNLRQHLRTHSGERPYRCALCDRTFAQSGALHAHARTHQPGRAHACARCGAAFRLRAGLARHVARHAGARPHRCGCGRAFAARHELAAHLPTHAAAAPHACALDRAELAPPPPEPAPGAPPPPRRFGCATCGRVFADASNLARHARALHAAGRPHACGACGRAFSRAEHLRAHMSQHEPGGGAGLLCEACGARVASAAALRSHRRRHAGAALACACGARFRRAGELRAHATAHAGLRPHACSCGAAFRLRAQLTLHRRRAGAREAPCGRGEGPPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -