Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751403.1:5339437-5344644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.029 1.9 9.7 6.8 1 23 170 192 170 192 0.97

2 11 2.2e-06 0.00015 22.6 2.4 1 23 237 259 237 259 0.98

3 11 3.6e-07 2.4e-05 25.1 2.3 1 23 265 287 265 287 0.99

4 11 1.9e-06 0.00012 22.8 4.4 1 23 293 315 293 315 0.98

5 11 6.5e-06 0.00044 21.1 0.4 1 23 321 343 321 343 0.99

6 11 4.6e-07 3.1e-05 24.7 0.8 1 23 349 371 349 371 0.98

7 11 4.8e-06 0.00032 21.5 3.6 1 23 377 399 377 399 0.98

8 11 6.1e-05 0.0041 18.1 0.2 1 23 405 427 405 427 0.98

9 11 6.6e-08 4.4e-06 27.4 0.5 1 23 433 455 433 455 0.98

10 11 4e-06 0.00027 21.8 0.4 1 23 461 483 461 483 0.98

11 11 1.3e-07 8.5e-06 26.5 2.4 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.029	1.9	9.7	6.8	1	23	170	192	170	192	0.97
2	11	2.2e-06	0.00015	22.6	2.4	1	23	237	259	237	259	0.98
3	11	3.6e-07	2.4e-05	25.1	2.3	1	23	265	287	265	287	0.99
4	11	1.9e-06	0.00012	22.8	4.4	1	23	293	315	293	315	0.98
5	11	6.5e-06	0.00044	21.1	0.4	1	23	321	343	321	343	0.99
6	11	4.6e-07	3.1e-05	24.7	0.8	1	23	349	371	349	371	0.98
7	11	4.8e-06	0.00032	21.5	3.6	1	23	377	399	377	399	0.98
8	11	6.1e-05	0.0041	18.1	0.2	1	23	405	427	405	427	0.98
9	11	6.6e-08	4.4e-06	27.4	0.5	1	23	433	455	433	455	0.98
10	11	4e-06	0.00027	21.8	0.4	1	23	461	483	461	483	0.98
11	11	1.3e-07	8.5e-06	26.5	2.4	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGTCTGGAAATTGGTGCAGAGCCTGTCTCTCCACCGGCATCAGGATGCATTGGATTGATAACGCTCAACTCTTGGAGATTTATGCAAAACTTACCAACACAGAGTTGACCAGAGACAACGGCAGGCTGAAGACAATATGCTACATCTGCTACTCTCAGCTGCAAAGGTGCCGAAAGTTCTCTGATATGACTCGCAGATCTGAGAAGATCCTTAGAGATCTGTTTCATGATGGTGTtgaggacAGCAACATAATCCTTACAGCGAACCTCGGAGCGACCCACAACTTATCAGTGACCGCTGTAAACTCCACATACTGCTTCAACGAGccagactttgactttgacaatgaCAGTTACCAGGAAGACGTCAAAGATGAGCTAGTCACTGTTAAGAGAGAGATAGATGAATCGGAGACGGCCAGCAGCTTTGTTGAAGTCCAAATTCGTGATATATTGAGAGATGTGATACCGGAAATGGAGGAAACAGTGCTAGATAGCACAAATGATTATTTCTGTCATCTGTGTAGTAGTAGATTTGATACACAGCACAAGCTGGTTAAACACACAAGACTACACAgtgaaaaatgcaaaaaatgcAGATCCTCACATTGTAAATGCAAAAAAACTCATAAATCACGTTTAAAATCAAAACTACAGAAATACAAGAGACCGAAATGCAAAAAAGAAAAACTCCTCGGAGAGAAACCGTTCACATGCGGTCAGTGTAACAAGAACTTCTCCGACAAAGCCTGCTTAATCAGACATCTGAGAATACACACTGGTATCAAGCCGTACTCATGCACAAAATGCAGTAAAAACTTCATTCGTGAGAGCGATTTAAAAACACACATGAGAATGCATACCGGAGAAAAGCCGTATGCTTGTACTAGTTGTAGTAAGACATTTAGTATGAAGCATAACTTAACTAGGCATATACGAACGCACACTGGAGAAAAACCATACACATGCACGAGGTGCGACAAAAGCTTCTCCGAGGAAGGTACTTTGATCGTTCACACTAGAATTCACACCGGAGAAAAACCGTATTCTTGTGACCGATGTAGCAAAGCGTTTATCAGACTCAGCGACTTAAAAACGCATATGCGCATACACACCGGTGAAAAACCATATGCCTGTAACATATGCAGCAAGACTTTCAGCATGAAACAGCATCTAAACCGACATACGAAAGTTCACACCGGTGAAAAACCTTATGCCTGTGATCGTTGCAGCAAAACTCTCGCTAGTCTCGGAGACTTAAGGTCTCATATGAGAGTGCATACCGGAGAAAAGCCGTATGCTTGCAATATATGCGGAAAAACGTTTGCTGTTAAGCAGAATCTTACTCGGCATACAAGAATACATACGGGTGAAAAACCTTATGCATGTGATCGGTGCAGCAAAGCATTTACTGGTTCTTCCGACTTGAAGTCACATTTAAGGATACATACAGGTGAAAAACCATTCTCTTGTAGCcgatgtgataagagttttacggAGAGGAGTAGCTTAACTAAGCACATGAGGATACACACTGGAAAAAACTCTTTTAAGTTGGAATAG
Protein Sequence: MSGNWCRACLSTGIRMHWIDNAQLLEIYAKLTNTELTRDNGRLKTICYICYSQLQRCRKFSDMTRRSEKILRDLFHDGVEDSNIILTANLGATHNLSVTAVNSTYCFNEPDFDFDNDSYQEDVKDELVTVKREIDESETASSFVEVQIRDILRDVIPEMEETVLDSTNDYFCHLCSSRFDTQHKLVKHTRLHSEKCKKCRSSHCKCKKTHKSRLKSKLQKYKRPKCKKEKLLGEKPFTCGQCNKNFSDKACLIRHLRIHTGIKPYSCTKCSKNFIRESDLKTHMRMHTGEKPYACTSCSKTFSMKHNLTRHIRTHTGEKPYTCTRCDKSFSEEGTLIVHTRIHTGEKPYSCDRCSKAFIRLSDLKTHMRIHTGEKPYACNICSKTFSMKQHLNRHTKVHTGEKPYACDRCSKTLASLGDLRSHMRVHTGEKPYACNICGKTFAVKQNLTRHTRIHTGEKPYACDRCSKAFTGSSDLKSHLRIHTGEKPFSCSRCDKSFTERSSLTKHMRIHTGKNSFKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01529387; iTF_00267407; iTF_00662418; iTF_01528499;
90% Identity: iTF_00662418;
80% Identity: -