Ealt023100.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epirrhoe alternata
Gene Symbol
-
Assembly
GCA_963565295.1
Location
OY751403.1:2455926-2468075[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.26 17 6.7 2.6 1 23 226 248 226 248 0.98
2 20 0.0016 0.11 13.6 3.0 1 23 254 277 254 277 0.91
3 20 4.5e-06 0.0003 21.6 2.2 1 23 281 303 281 303 0.99
4 20 2.7e-06 0.00018 22.4 1.8 1 23 309 332 309 332 0.94
5 20 1.3 90 4.4 2.6 1 19 337 355 337 360 0.77
6 20 0.0097 0.65 11.1 4.5 1 23 367 390 367 390 0.95
7 20 2.6e-06 0.00017 22.4 0.5 1 23 396 418 396 418 0.98
8 20 8.2e-05 0.0055 17.7 2.7 1 23 423 445 423 445 0.98
9 20 0.00019 0.013 16.5 1.1 1 23 451 473 451 473 0.97
10 20 0.0092 0.62 11.2 0.9 1 23 478 500 478 500 0.97
11 20 0.00021 0.014 16.4 1.1 1 23 508 530 508 530 0.98
12 20 4.1 2.8e+02 2.9 1.7 2 23 541 559 541 559 0.88
13 20 7.1e-07 4.8e-05 24.1 1.2 1 23 565 587 565 587 0.99
14 20 5.1e-06 0.00035 21.4 0.6 3 23 595 615 593 615 0.96
15 20 0.00044 0.03 15.4 5.4 1 23 621 643 621 643 0.99
16 20 7.2e-05 0.0049 17.8 2.8 1 23 649 671 649 671 0.99
17 20 0.74 50 5.2 0.8 1 23 677 699 677 699 0.93
18 20 9.4e-06 0.00063 20.6 1.0 1 23 704 726 704 726 0.98
19 20 0.32 22 6.3 0.5 2 23 732 753 731 753 0.91
20 20 2.6e-05 0.0017 19.3 1.2 1 23 788 811 788 811 0.97

Sequence Information

Coding Sequence
ATGTATTCGCTTCTGAATACCCCATTGCAAGTTATCTACGAAGGACtcacaagttacaagCTCAGCACAGAAGATGGAAGACCAGAGACAGCATGCTTCATCTGTTTCAGCCAATTACAGACCTGCCTGCGATTTAAGGAGAAATCACAAAAATCCGAGGAAATAATATCACAGCTGTTTCAAAATGGCATTGAGATATGGCAAGATACAGTAGCAATCCTAAACAAGGGGATACCACATGATTTTAGCATAACAGACATAGAAACATTTCGCTGTGCTAAAACACTCGCTGTGAAGGAGGAACAGACTACAATTGATGAAAAAAGACCACTAATAACCAAAATTGAAGATGCAGAGACAGtACAATCTGAGACCGAACTATGCAGGGTGTGTCTATCTGGAGTCCAGACATTTCCCATCAGAGGTACTTCGCTGCACACTGTCTACGAGAAGCTGGCCAATACTAAGCTGTCACATGAAACGGTGATGGTGCTCAACAGTAAAATCAAACCTCTTTTGGAAGTGGCTCCGACAGAGTCTGTATCTTTCTTCACCTTCGGACAATTCTGTACTGTGGATCTAAGCAAGGATAACATACTCTCTAAGGCATTCTCATTGGATCAAGatgaaaagaaaaagaaacagTTTGACGTGTTTAAGCGGCCACACTTCAAATATAAATGTGGAGTTTGCAAATACAGTTGTATGGGGCTCCGTGTCTACAAGAACCATATAAAAATGCACTCGGTACAGCGCCCCTATGCCTGCGATATGTGCACCAAAAGATTTCCGGGACAAGTCCATCTAAAAAGGCATAAAGAAGCTTGCCACGGAATTGTTTATAAATGTCCGAAATGCCCGGAAAAATTCAGAAAAAAAAGCAAATACAATCTACACATGAATATCCACTCGGAGCGGGTTGTGTACGAATGCGATTTCTGCAATAAAGTCTTCACGACTAAGTCCTACCTGAAAAAGCACAATGAGATGGTACACGGCGGGTATAAATACAAGTGCGATCGGTGTGACTGCTCATTTCCCACCGAGCTCCGGCGGAAGATACATGTGATCCACGTCCATGGAAGTGAATTTCCGCATTACACTTGCGATTGTTGCCGTAAACAGTTTAAAACGAAAGTTGAATTAAGCAAACACATGGTCCGCACTCACGCTGCAACGAGGAAGTTTAAATGCGATATTTGCGAGAAGAGTTTCAAACAGAAGGGTACTTTGGGTGTTCATTTAAAAGTGCATTTGGAGAAATCTTTTGAATGTGGTTTTTGCTCGAAAACTTTCAGACAAAAATCGAGATTGGCAACACATTTGAAATACCATCTCAATCAAAAAGATTTTATATGCGAAGTCTGTGCTAAGCGCTTTGTTGACAAACACGCTCTAAAGAACCACTCAAAGGTACACACTGGAGAGAGATACAAATGTGAAGTTTGCAACGCTGAGTTCTATCGCAAATACTTTTAcgatgaacatattgaacagcATAAAAATGGGTTGAATCAAAAATATATGTGCAAAGAATGCGGCTTAATGTACCAATTACAAAGCCAACTGAAATTACACATGTACCGCCATAAATATCCAAAGGTAGTAAGGAAGTTAGAAACGTGCACTGTTTGTCAGAAAGAAACGAAATATCTTAGAATGCATATGAAAATTCACGAGGACTCGAAACCTTACAAATGCGATATCTGCGGGAAAGCATTCCGCGCGTCCAGGAACTTATCGACCCATAAGAGAACACATGAAGGGCTCAAGCAGTTTGGCTGTGATGAATGTGGCAAATTTTTCGCAAGTAAAAGCAACTTGAAACTTCATTTGTCCTTACATAACTCAGCGAGACCTTACAAATGCGATGTCTGCAACGCTACTTACTCTCACAAAGAGAAATTAGCTCACCATAAACGCAAACATTCTAGAGTGTTCATCTACCAATGTGAAGAATGCGGAAAGAAATTCTCCGAGAAACGCTCTCTGAATTTCCACAAGAGAACTCACATAGATATTACGAAATTCATCTGCGATCTTTGCTACAAAGTGCATTTGGATAAAGCTGATTTAATTCAGCATATAAAAAGACATAGGACAAGTAAATTTAAATGTGAGATTTGTCAGAAAACATTTGGAAAATTGAAAAGTTTGGCCGAGCATATGAGACAGCACAAGAAGGACAAGTCTGTATGTCCGCTGTGCAAAGTTGTCACGAAAAGACTTAATTTGAGGAAACATTACAATATGTTGCATAATGGTGTTATGCCATATGCCTGCACCGTTTGTGAAGAAGGCTGGTGTATGCTTGAAAAAGTATATGATCATTATATGCAAATACATAGTAAAGAGGACAGATTTGTTTGTGAGCTATGTGTCAAAGCGTTCACGAGACGTCCCCATCTTAGGGAACATATGGAAAAGCAACATAATCGTTAA
Protein Sequence
MYSLLNTPLQVIYEGLTSYKLSTEDGRPETACFICFSQLQTCLRFKEKSQKSEEIISQLFQNGIEIWQDTVAILNKGIPHDFSITDIETFRCAKTLAVKEEQTTIDEKRPLITKIEDAETVQSETELCRVCLSGVQTFPIRGTSLHTVYEKLANTKLSHETVMVLNSKIKPLLEVAPTESVSFFTFGQFCTVDLSKDNILSKAFSLDQDEKKKKQFDVFKRPHFKYKCGVCKYSCMGLRVYKNHIKMHSVQRPYACDMCTKRFPGQVHLKRHKEACHGIVYKCPKCPEKFRKKSKYNLHMNIHSERVVYECDFCNKVFTTKSYLKKHNEMVHGGYKYKCDRCDCSFPTELRRKIHVIHVHGSEFPHYTCDCCRKQFKTKVELSKHMVRTHAATRKFKCDICEKSFKQKGTLGVHLKVHLEKSFECGFCSKTFRQKSRLATHLKYHLNQKDFICEVCAKRFVDKHALKNHSKVHTGERYKCEVCNAEFYRKYFYDEHIEQHKNGLNQKYMCKECGLMYQLQSQLKLHMYRHKYPKVVRKLETCTVCQKETKYLRMHMKIHEDSKPYKCDICGKAFRASRNLSTHKRTHEGLKQFGCDECGKFFASKSNLKLHLSLHNSARPYKCDVCNATYSHKEKLAHHKRKHSRVFIYQCEECGKKFSEKRSLNFHKRTHIDITKFICDLCYKVHLDKADLIQHIKRHRTSKFKCEICQKTFGKLKSLAEHMRQHKKDKSVCPLCKVVTKRLNLRKHYNMLHNGVMPYACTVCEEGWCMLEKVYDHYMQIHSKEDRFVCELCVKAFTRRPHLREHMEKQHNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-