Ealt021442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epirrhoe alternata
Gene Symbol
-
Assembly
GCA_963565295.1
Location
OY751400.1:7398522-7402150[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.1e-06 0.00061 20.7 1.3 1 23 199 221 199 221 0.98
2 17 5.8e-08 3.9e-06 27.6 1.3 1 23 227 249 227 249 0.98
3 17 0.0052 0.35 12.0 8.1 1 23 255 277 255 277 0.98
4 17 0.0029 0.19 12.8 0.1 3 21 284 302 282 303 0.90
5 17 2.8e-05 0.0019 19.1 4.2 1 23 311 333 311 333 0.97
6 17 1.4e-06 9.3e-05 23.2 0.3 1 23 339 361 339 361 0.98
7 17 2.7e-06 0.00018 22.3 2.0 1 23 367 389 367 389 0.98
8 17 0.00017 0.011 16.7 0.8 1 23 395 417 395 417 0.97
9 17 0.001 0.069 14.2 5.7 2 23 428 449 427 449 0.96
10 17 1.7e-06 0.00012 22.9 1.0 1 23 455 477 455 477 0.98
11 17 1.8e-06 0.00012 22.8 0.3 1 23 483 505 483 505 0.98
12 17 6.9e-06 0.00046 21.0 0.5 1 23 511 533 511 533 0.98
13 17 1e-05 0.00069 20.5 0.3 1 23 539 561 539 561 0.97
14 17 4.3e-06 0.00029 21.7 0.8 1 23 567 589 567 589 0.98
15 17 0.00014 0.0094 16.9 0.4 1 23 595 617 595 617 0.98
16 17 1.4e-06 9.6e-05 23.2 2.7 1 23 623 645 623 645 0.99
17 17 0.00018 0.012 16.6 1.0 1 20 651 670 651 671 0.94

Sequence Information

Coding Sequence
ATGTCTACTCCACCTGTGTGTAGGGTATGTTTACTTGACAATATCAGGATGCAATCAGTTCGGAGTCAACCATTGCAAGATATGTTTGAGTTGCTTGCAGATAACAAGCTCTTCACCAATGATGGGAGGCCAGAATCAGTGTGCTACATTTGCTTCTCTCAGCTGCGTAGATGCTACAAGTTCTTGCAGATGTCACGGAAAGCTGAAAATATCCTCACCCAATTGTTCCATAATAATTTGAagATATCACAAGAAACTGTACAAATGCTGAATGGAGGTCCGTTGAACTCCCTACCACAAATACAACCAATATCTCACCATAACTTCCTGCCTGAAGACATCTTAGGAGTCAAACAAGAGGAGCATCACATAGAAAGCTTTTCGATAGAAACTGGAAAGTTTGTTCGGGAAGATGTGAAGATGGACTATGTCGGATATTTCGATGTAACTacagaaaaagaaataaaagaagaaaattcGGATCATGACAGAATCAAACAGATCTTTATACAACACGACGCCGACGTCAAAAAGGAGCATCAATTTGATCAATGTTCTAGTGCTGAAAGCCAAAATTACAGTAGTGAATTACCATTCAGTTGCAATGTTTGCGCTAAATCATATGCAAACAGATATGTTTTAAAACGACATATGAAAACACATACAGGAGAAAAACCTCATGTGTGCAGCATTTGTAATAAATCATTCTCTGAGAATAGTGATTTGATAAAACACATGAGAATACATAATGGCGAGAAACGATATTCCTGTACTGTGTGCAATAAGAAATTTCACGAGAatcataaatttaaaaatcacatGAAGCTCCACGAAAATGAGGATCTAGACTGCGATATGTGCGATGAGACGTTCTCCGATAGCCAACAGTTAGATACGCACAATAACACGACATACTCTGGACCCAAACCGTTTGCTTGTGAATTGTGCCACAAAAGATTCTCATTCAAGTCTAAATTAGACAGGCACGTGCGAACACACACGGATGAGAAACCCTATGCATGCGATTTGTGTGACAAAACGTTCGCTGAAAGTGGAAACTTAAAAACCCATAGAAGAGTTCACACAGGCGAGAAGCCGTTTTCCTGCGATGTATGCCAGAAGCGATTCACAACCAATAACACATTAAAAACTCACATGTCCATTCACACTGGGGAAAAATCATTCGCTTGTGGCCGATGTGACAAATCATTCACAGCGATCGACTATTTGAAACGTCATAAAAAAATCCACGACACCGATAGTAAAGCCACATGTACGTGCACTTGTGATCGTTGCGGGAAAACTTTTTTAGATAAATGCGCTCTAAAGAAACACATGAAAATTCATACTGGAGAGAAGTTGTTTGTGTGTGACATGTGTGACAAGAGGTTTGCTGCGAAGTCGAAATTGAAAAGGCATGTTAGGAGTCACACAGAAGAACGGCCTTACGCTTGTAATTTGTGTGATAAAGCATTCGCTGAGACTGGAAGTTTGAAAACACACATGAGAACACACACTGGAGAAAAACCATACTCCTGTGACGCGTGTGGTAAAGGCTTTGCGCAGTCTAATTCGTTGAAAAAACACCTTACTACCCACACTGGAGAACGACAATTTGCATGCGTTGTCTGTTTTAAAAGCTTCGCCGTTAAGAATAACTTGACAGATCACATGCGAATTCATAGTGGCGAAAAGCCATACATCTGCAGTATATGCAATAGAGGCTTTGCTCAGTCTAATTCTTTGAAAAAGCATCTTACAACTCACACTGGGGAAAAACAGTTCTCCTGTGTCATTTGCTATAAATCTTTTGCAGCTAAGAATAGCTGGAAAATTCATATGAGAGTTCACAGTGGAGAAAAACCATATTCGTGCAATACTTGTAGTAAATCGTTTATAGACAGTAGTACTTTAAGTAGACATAAAAGAACGCACACGGGAGAGAACCCGTACACTTGTATTGAATGCCACAAGTCTTTTAGTAGAAAAgcatatttacaaaaacatgTGGTGTTTTGCAAACCTCAATGA
Protein Sequence
MSTPPVCRVCLLDNIRMQSVRSQPLQDMFELLADNKLFTNDGRPESVCYICFSQLRRCYKFLQMSRKAENILTQLFHNNLKISQETVQMLNGGPLNSLPQIQPISHHNFLPEDILGVKQEEHHIESFSIETGKFVREDVKMDYVGYFDVTTEKEIKEENSDHDRIKQIFIQHDADVKKEHQFDQCSSAESQNYSSELPFSCNVCAKSYANRYVLKRHMKTHTGEKPHVCSICNKSFSENSDLIKHMRIHNGEKRYSCTVCNKKFHENHKFKNHMKLHENEDLDCDMCDETFSDSQQLDTHNNTTYSGPKPFACELCHKRFSFKSKLDRHVRTHTDEKPYACDLCDKTFAESGNLKTHRRVHTGEKPFSCDVCQKRFTTNNTLKTHMSIHTGEKSFACGRCDKSFTAIDYLKRHKKIHDTDSKATCTCTCDRCGKTFLDKCALKKHMKIHTGEKLFVCDMCDKRFAAKSKLKRHVRSHTEERPYACNLCDKAFAETGSLKTHMRTHTGEKPYSCDACGKGFAQSNSLKKHLTTHTGERQFACVVCFKSFAVKNNLTDHMRIHSGEKPYICSICNRGFAQSNSLKKHLTTHTGEKQFSCVICYKSFAAKNSWKIHMRVHSGEKPYSCNTCSKSFIDSSTLSRHKRTHTGENPYTCIECHKSFSRKAYLQKHVVFCKPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-