Ealt022171.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- -
- Assembly
- GCA_963565295.1
- Location
- OY751402.1:2345660-2354862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 8.2 5.5e+02 1.9 0.3 1 23 48 70 48 70 0.92 2 35 0.1 7 7.9 0.2 3 23 96 117 94 117 0.93 3 35 0.66 44 5.4 2.6 1 23 139 161 139 161 0.92 4 35 0.0019 0.13 13.3 0.3 1 23 165 187 165 187 0.96 5 35 0.00042 0.028 15.4 1.2 1 23 192 215 192 215 0.98 6 35 0.0048 0.32 12.1 2.8 1 23 221 244 221 244 0.97 7 35 0.43 29 6.0 2.4 1 20 287 306 287 309 0.87 8 35 0.78 52 5.1 0.1 2 23 332 354 331 354 0.94 9 35 0.0099 0.66 11.1 1.3 1 23 377 399 377 399 0.99 10 35 5.7e-06 0.00038 21.3 0.6 2 23 404 425 403 425 0.97 11 35 0.0041 0.28 12.3 1.9 1 20 433 452 433 457 0.91 12 35 0.0025 0.17 13.0 1.0 2 23 463 485 462 485 0.95 13 35 0.023 1.6 9.9 1.0 1 23 491 514 491 514 0.96 14 35 1.6e-05 0.001 19.9 0.2 1 23 520 542 520 542 0.98 15 35 5.9e-05 0.004 18.1 7.0 1 23 548 570 548 570 0.99 16 35 0.38 25 6.1 1.5 1 17 576 592 576 593 0.89 17 35 1.2 78 4.6 2.2 1 20 633 652 633 655 0.86 18 35 2.2 1.5e+02 3.7 0.1 2 23 678 700 677 700 0.92 19 35 0.0078 0.52 11.4 4.2 1 23 723 745 723 745 0.98 20 35 7.3e-06 0.00049 21.0 0.5 2 23 750 771 749 771 0.97 21 35 0.0036 0.24 12.5 0.5 1 22 779 800 779 803 0.91 22 35 0.002 0.13 13.3 2.4 2 23 809 831 808 831 0.95 23 35 0.023 1.6 9.9 0.9 1 23 837 860 837 860 0.96 24 35 6.2e-05 0.0042 18.0 0.1 1 23 866 888 866 888 0.98 25 35 2.6e-06 0.00017 22.4 4.0 1 23 894 916 894 916 0.99 26 35 0.38 25 6.1 1.5 1 17 922 938 922 939 0.89 27 35 0.67 45 5.4 0.1 2 23 1024 1046 1023 1046 0.94 28 35 0.00077 0.052 14.6 3.1 1 23 1069 1091 1069 1091 0.97 29 35 5.4e-06 0.00036 21.4 0.2 2 23 1096 1117 1095 1117 0.97 30 35 0.00068 0.046 14.8 0.9 1 22 1125 1146 1125 1149 0.91 31 35 0.00044 0.029 15.4 3.1 1 23 1154 1177 1154 1177 0.96 32 35 0.0096 0.65 11.1 0.6 1 23 1183 1206 1183 1206 0.97 33 35 4.3e-06 0.00029 21.7 0.5 1 23 1212 1234 1212 1234 0.98 34 35 5.8e-05 0.0039 18.1 3.5 1 23 1240 1262 1240 1262 0.98 35 35 0.00017 0.011 16.7 5.1 1 23 1268 1290 1268 1291 0.96
Sequence Information
- Coding Sequence
- ATGGACGCAAATTCCAGCTTGGAAAAAGAGGATCGCCAGATAGTCTGGAAGCGAAAACGACTCCTGCCAGAAGACAAGCGAAATGCAGCCCTAATTATAAAGCATTCAAACTGTGTTGTCTTTCGATGTCATAGAGGAAAGTTTATGTGCGCTTTCTGTCCCAAAATAAACATCAGTATGACTGAACTTCGTTCTCACACATCAGAACATAACAAATTAGATGTCTTTGAAACGAACAAAATCCGGCTCTGCCTGCCCGTAAACATAGAAATCACAGATCTTGCTTGCAAAGTTTGCAACAAGCTCATCAAGAATGTTGATGAATTAAAAAGCCATTTAAATGACTCTCATGACATTAAAATGCATCCAAACCACTCGGATGGTGTCATACCGTACCGGCTGGTTGCGCAGGAGTTCATATGCGCCTGTTGTGATATGCGTTTTGACAAGTTTCAAACTCTCTCAGTGCACATGAACAAACATTTTCCGAGCTTTGTATGTGATAATTGCGGGAAAGGTTTCACGGCAGATTATAAGCTACGTTCGCACAAAGCGATACACGATTCGGGACAATTCAAATGCACAGAATGTGACATGGTTTTCCAGAACCGAAGTGCTAAAAATACTCATATTAACATGAAACACCGTTCAAAAGAAAGACACCGCTGCCCGATATGTGACGAACACTTTGTTACGTATTATAGTCGGCTGCAGCATCTTAAATCGGCACACGGAACCACTTACGGGACCATAAAATGGAAATGGAGAACGAAGACAAGGTACCACGATCACAGAGACAATGCAGCTATTATCCTAGAATGTTCTAATATTTTTCCTTTTCGATGGTTTGGAGGCGTATTTCTATGTGCGTACTGCCCTCTTACCTTTCGCAAATTTGAACTTCTTAAGGAACACTGCAACGAACACCCCAAGAAAGCCAATGCTCTCCGCAATGTAGGCAAACGGATGCTCAAATGTGATATCACAGATCTAAAATGTGTGCTCTGTAACGAAAGCATAAACGACCTCAATACTTTAGTAGAACATCTACAGGAAACACACAAAAAGTCTATTGCTACTGATCTTGGACTGGGTATTTTTCCATACAAGCTTAAAACCGATGGGGATTATCAATGCGCCTACTGCACTGAAAAGTTTCAGCTCTTCGTGAGTTTGAGCACGCATATGAACAGTCATTTGCCTAATTCAGTTTGTTCTCTCTGTGGTAAAGCATTCTCGGAGAGGAAAAAGTTGACTGCGCATTTGAGAACTCATGGTCTCTGTGTCAAAGGAGAGTATAAATGTACGAAGTGCGAGGAGGTCTTCTCGAGCTCTTACGAGAGGAGAAAACACTCAACATCGGCTAAGCACTCCACCTGGCGCAATAAATGTCCAAATTGCAACGAGAGCTTCAAAAGCTACTATGACCGATTGAAGCACTTGAAAGATGTTCACGATATTAATGTCGAGTTCCCGTGTGATCAATGTTCTGCTGTCTTTAAGATGGCGAACCACAGAACCAAGCATATTCAACAAGTTCACATAAAAAATAAGCGGTTCAGCTGCACCGTGTGTCCGTCCTCATTTGTGAGAGCTTCTCAGTTACGAGAACATATGGTTACGCATACCGGGGAGCGAAAGTACCAATGTCAAGTCTGTAAGAAATGCTATTGTAGAGAATATACTCTCAAGGAACATATGCGTATACATAACAATGATAGAAGATTTCTGTGCATGTACTGCAATAAAGCGTTTGTACAAAAATGTAGCCTTAAAGGAACCACTTACGGGACCATAAAATGGACAACGAAGACAAGGTACCACGATCACAGAGACAATGCAGCTATTATTCTAGAATGTTCTAATATTTTTCCTTTTCGTTGGGTTGGAGGCGTATTTTTATGTGCGTATTGCCCTCTTACCTTTCGCGAATTTAAACTTCTTAGGGAACACTGCAACGAACACCCCAAGAAAGCTAATGCTCTCCGCAATGTAGGCAAACGGATGCTCAAATGTGATATAACAGATCTAAAATGTGTGCTCTGTTACGAAAGCTTAAACGACCTCAAAACTTTAGTAGAACATCTAATAGAAACACACAAAAAGTCTATTGCTACTGATCTTGGATTGGGTATTTTTCCATATAAAGTTAGAACCGATGGGGAGTATCATTGCGCATACTGCACTGAAAAGTTTAAGCTCTTCATGAGTTTGAACAAGCATATGAATAGCCATTTGCCTAATTCAGTGTGTTCTCTCTGTGGTAAAGCATTCTCGGAGAGTAAAAAGTTGACTGTGCATTTGAGAACTCATGGTCTCGGTGTCAAAGGACAGTACAAATGTACGAAATGCGACGAGATCTTCCCGAGCGCTTACGAGAGGAGCAAACACCTACTGTCCGCTAAGCACTTCACCAGGCGCAATAAATGTCCACATTGCAACGAGAGCTTTAAAAGCTACTATGACCGATTGAAGCACTTGAAAGATGTTCACAATATTAATATCGAGTTCCCTTGTGATCAATGTTCTGCTGTCTTTAGGATGGCGAACCACAGAACGAAGCATATTCAACAAGTTCACATAAAAAATAAGCGGTTCAGCTGCACCGTGTGTCCGTCCACATTTGTGAGGGCTGCTCAGTTACGAGAACATATGGTTACGCATACCGGGGAGCGAAAGTACCAATGTCAAGTCtgtaacaaatgttataccAGAGAATATACTCTCAAGGAACATATGCGTATACATAACAATGATAGAAGATTTCTGTGCATGTACTGCAATAAAGCGTTTGTACAAAAATGTAGCCTTAAAGGATCCACTGGCGGGACCTTAAAATGGACATCGAAGCGAAAATATCATGATCAGAGAGACAATGCTGCTATTATTTTAGAATGTTCTAATATGTGTCCTTTTCGGTGGCGACGAGGCGTGTTTGTATGTGCGTATTGCTCTGTTAACTTTCCTGAATTTGAACCTCTTAGGGAACACTGCAACGAACACCCTAATAAAATGAAAGCACTGCGGATTTTAGGTAAAAGGACGCTCAAATGTGATATCACAGATCTAAAATGTGAGCTCTGTTTCGAAAGCATTAAAGACTTTAATGATTTGGTAGAACATCTAAAAGATGTGCACAAAAAGTCTATTGCTACTGACCTTGGATTTGGTATTTTCCCATTCAAGGTAAGAACCGATGGGGACTTTGATTGCACATACTGTACTGAAAAGTTTAAGCTTTTCACGAGTTTAAACAAGCACATGAATAGCCATTTCCCTAATTCAGTGTGCCCTCTCTGCGGTAAAGCATTCTCGGAGAGCAATAAGTTGACTGCGCATTTAAAAACTCATGGTGTCGGAGTCAAAGGCCAGTATAAATGTACGAAATGCGACGAAGTCTTCACGAGCGCTTACGATAAAAGCAAACACGTAATGTCGGCTAAGCACTCCACCATGCGCTATAAATGTCCACATTGCAAAGAGATCTTCAAAAGCTATTCTAACCGCTTAAAGCACTTAAAAGATGTTCACGATTTTAAAATCGAGTACCCGTGTGGTCTATGCTCTGCCGTTTTTAGGATGGCAAACCATAGAACTAGACATATTCGACAGGTTCATATAAAAGATAAGCGGTTCAGCTGCACCGTGTGTCCGTATCAGTTTGTTACAGCTTATCAGTTACAGCGACATATGATAAGCCATACCGGGGAACGAAATTTCGAATGTCAAGTATGTAAGAAATGTTATTCCAGAGATAATACTCTCAAGGAACACATGCGTATACATAACAATGATAGGAGATTTGTGTGCGTGTATTGCAATAATGCGTTTGTACAAAAATGTAGCCTTAAAAGTCATATGAGGACGCATCATCCGAACTGTGAACCGCTATCCGATGAAAAGAAACAATGA
- Protein Sequence
- MDANSSLEKEDRQIVWKRKRLLPEDKRNAALIIKHSNCVVFRCHRGKFMCAFCPKINISMTELRSHTSEHNKLDVFETNKIRLCLPVNIEITDLACKVCNKLIKNVDELKSHLNDSHDIKMHPNHSDGVIPYRLVAQEFICACCDMRFDKFQTLSVHMNKHFPSFVCDNCGKGFTADYKLRSHKAIHDSGQFKCTECDMVFQNRSAKNTHINMKHRSKERHRCPICDEHFVTYYSRLQHLKSAHGTTYGTIKWKWRTKTRYHDHRDNAAIILECSNIFPFRWFGGVFLCAYCPLTFRKFELLKEHCNEHPKKANALRNVGKRMLKCDITDLKCVLCNESINDLNTLVEHLQETHKKSIATDLGLGIFPYKLKTDGDYQCAYCTEKFQLFVSLSTHMNSHLPNSVCSLCGKAFSERKKLTAHLRTHGLCVKGEYKCTKCEEVFSSSYERRKHSTSAKHSTWRNKCPNCNESFKSYYDRLKHLKDVHDINVEFPCDQCSAVFKMANHRTKHIQQVHIKNKRFSCTVCPSSFVRASQLREHMVTHTGERKYQCQVCKKCYCREYTLKEHMRIHNNDRRFLCMYCNKAFVQKCSLKGTTYGTIKWTTKTRYHDHRDNAAIILECSNIFPFRWVGGVFLCAYCPLTFREFKLLREHCNEHPKKANALRNVGKRMLKCDITDLKCVLCYESLNDLKTLVEHLIETHKKSIATDLGLGIFPYKVRTDGEYHCAYCTEKFKLFMSLNKHMNSHLPNSVCSLCGKAFSESKKLTVHLRTHGLGVKGQYKCTKCDEIFPSAYERSKHLLSAKHFTRRNKCPHCNESFKSYYDRLKHLKDVHNINIEFPCDQCSAVFRMANHRTKHIQQVHIKNKRFSCTVCPSTFVRAAQLREHMVTHTGERKYQCQVCNKCYTREYTLKEHMRIHNNDRRFLCMYCNKAFVQKCSLKGSTGGTLKWTSKRKYHDQRDNAAIILECSNMCPFRWRRGVFVCAYCSVNFPEFEPLREHCNEHPNKMKALRILGKRTLKCDITDLKCELCFESIKDFNDLVEHLKDVHKKSIATDLGFGIFPFKVRTDGDFDCTYCTEKFKLFTSLNKHMNSHFPNSVCPLCGKAFSESNKLTAHLKTHGVGVKGQYKCTKCDEVFTSAYDKSKHVMSAKHSTMRYKCPHCKEIFKSYSNRLKHLKDVHDFKIEYPCGLCSAVFRMANHRTRHIRQVHIKDKRFSCTVCPYQFVTAYQLQRHMISHTGERNFECQVCKKCYSRDNTLKEHMRIHNNDRRFVCVYCNNAFVQKCSLKSHMRTHHPNCEPLSDEKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -