Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388225.1:7532758-7559015[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.012 1 10.9 2.5 1 19 229 247 229 250 0.94

2 14 0.0025 0.2 13.1 0.7 1 23 273 296 273 296 0.96

3 14 2.8 2.3e+02 3.5 3.4 1 22 333 354 333 354 0.86

4 14 5.8 4.7e+02 2.5 1.1 1 10 359 368 359 381 0.80

5 14 1.6 1.3e+02 4.3 3.3 1 23 830 851 830 851 0.94

6 14 0.048 3.9 9.1 1.6 1 23 865 887 865 887 0.97

7 14 0.049 3.9 9.0 0.2 2 23 893 914 892 914 0.97

8 14 0.26 21 6.7 0.5 5 23 1012 1030 1009 1030 0.89

9 14 7.5 6.1e+02 2.1 1.8 3 23 1047 1067 1045 1067 0.78

10 14 1e-06 8.1e-05 23.8 2.9 1 23 1073 1095 1073 1095 0.98

11 14 0.00028 0.023 16.1 0.8 1 23 1100 1122 1100 1122 0.98

12 14 0.0088 0.71 11.4 5.5 2 23 1129 1150 1128 1151 0.94

13 14 2 1.6e+02 4.0 0.4 1 20 1158 1177 1158 1181 0.91

14 14 0.061 4.9 8.7 0.3 3 21 1190 1208 1189 1211 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.012	1	10.9	2.5	1	19	229	247	229	250	0.94
2	14	0.0025	0.2	13.1	0.7	1	23	273	296	273	296	0.96
3	14	2.8	2.3e+02	3.5	3.4	1	22	333	354	333	354	0.86
4	14	5.8	4.7e+02	2.5	1.1	1	10	359	368	359	381	0.80
5	14	1.6	1.3e+02	4.3	3.3	1	23	830	851	830	851	0.94
6	14	0.048	3.9	9.1	1.6	1	23	865	887	865	887	0.97
7	14	0.049	3.9	9.0	0.2	2	23	893	914	892	914	0.97
8	14	0.26	21	6.7	0.5	5	23	1012	1030	1009	1030	0.89
9	14	7.5	6.1e+02	2.1	1.8	3	23	1047	1067	1045	1067	0.78
10	14	1e-06	8.1e-05	23.8	2.9	1	23	1073	1095	1073	1095	0.98
11	14	0.00028	0.023	16.1	0.8	1	23	1100	1122	1100	1122	0.98
12	14	0.0088	0.71	11.4	5.5	2	23	1129	1150	1128	1151	0.94
13	14	2	1.6e+02	4.0	0.4	1	20	1158	1177	1158	1181	0.91
14	14	0.061	4.9	8.7	0.3	3	21	1190	1208	1189	1211	0.88

Sequence Information

Coding Sequence: ATGACTGAAATCGGTAGGAAAAGAAGCAGAAAAACGAAACTAGTGCCGCGGGAGTGTGCTGATTTTTTGGACGATGATTTAGTTTTGCAGGCACCACAAAAGAAACCACTCCTGGAAAAAATTAAAAAAGAACCCGGCTTCATACCACACGAGTCTTCCCACCAATTCTCCGTCAAAGTGGAAATCGAGGACATGGACGGCTCCATCCCTGATGAGGATCCTTCAGACTACATGAAGTACCTCTTCAGTCTCTCCAAAGAGGCTGAAGAGGAGCCTAAAGAACTTGACTATGCTGACAACAGTCTCTTGCTAGAGCAGAAACTGGTCATACCGTTACCGGAGGATGATAGAAACATTGTTGATGTAAGGAAAACACAGAAGATGCTTGGAGTACTGCATAAGAAGTACCCGGAGGATAAGGAAGCAGTGTTGTACACTAGGAACCAGTGGGGGAAGGTGTTCAGTGAGAAGCTAGCGTTGGAGGTTAAAAGAACTCCGCAAGAAGCACTTATACAGGCTACTCTTGACCGGTGGAAGCTCGAGACGAGGCAGCAAGAATGCAACATAGTCGCGTACGGGACTGAGGGACTTCCACTTCAGGAAATAGTAATCCACGGAAAATGCCTGAAGTGCGCTAAAACTTACGACCACCATCAAAGCAACAAGAGAGACTTAGACGCATATTACTATTGCAATTACTGCGACGAGAGATTCCACAACTGCAGGGCTCTAGCTAAACACGAGGGCACATGCGCCAGGAATCCTATAAGAGTCCTAGCTATATCAAAAGCTGGTAAAGAATACTCATTCTCAGATTTCTCCTGCGAAGTCTGCCAGACTGTATTCATGTCGAACCCAGACTTGTCCGAGCACATGACAATATGTCACAAGGTCCGTTCAGACGAGCCGATAGTCACCAAATTCAAGACCTGTCACTTATGCGAACAGAAGTATTTTATCTTCAATTTCCATGCATGCTCAAGGAAGAATGCTAACTACGAATGCAAGCACTGTTCAGCTAAATTCCATAATAAAATGATCTTGGATCATCACTTGAAGACGTGGGAGGGCGTGTACCAATGCAGAATCTGTGATAAGTTCCTTCAGAAGAGTTGCATGGCCGGAGAGCACTATGCGTTGCACAGCAAACACTTCCTGAGTGTGATCCGGTGTCTTGTGTGTAAGAAGATAAAGGTGTTTCTGAGTGAGGAAGCCTGGAGGAACCATAGGATCAAGTATCATCGGAGGTTTGACTATCGACGGATGAACTGTGATAAGGTGAGTACACATGTTCTACTGGCAATGGGGCTAGACCAACCTGCTGATACGACGCGTCGAGTGGGAGTCAACGACTATATCTCACTCGTAGTGTTCATATTGTGCCGGCTGTACACACTCGTCGAGACACCCCGAGCCAGACCGAGAACGAGTGTGTACATGATGCTCTCACCTTGTCTCGCCCGCTCGGGTCTCGCCTTGGTCGCGCCCCCGAAGTTGCAGCCCGCGCCGCCCTCCAACGACAAGTTCAAGCTGACGAGAGGCGAAACCATGCCACTTGTTCGAGTCTACGTCCCTGTGCACAAAAACAGGGCTGCAACTTTAGAAGCCTCGCAGAACACTACCATTGCTCATGACAACACAGTCACTATGCGAACTGATGACGTACCTGAAAATGCCGTAATTCGCGTGAAACAAGAAAAAGAAGACATCGCTGAGAGTAAAGAAATAGATGATGAAACGATACTTGAGAATGTACAAGAAGAAATGGAGATTAGTAAGAAAGTATATGAGAAGTCACTAGAGAATAAGAATCAATTGGCTGACAAGAACGTACTTGAGAATTTACGAGAAGTAAGTGAGAATAAAGAATTGGATGACAATAAGGTATTTGAGATATTAAGAGAAGTAAGTGAAAATAAAGAAATTGATGATAATAAAGTACTTGAGAGTTCACAGGAAGTTCTTGAAAATAAACAATTGGAAGATAAAATACCCGAGTATTTTGCAGAGAAAGTCATCAAAACTGAAAAAAATGATGATAAGCAAACATCCATTTCAAAAGATACACCAATAGAAATAGAAAAACAGGGCAAAAAAGACATAGGAAACATAATGGCTGAGCTCAATGAGTTTCTCGATATCAAACCTGATATTATAATAAAGAAAGAACACATGACTGTAGAAGAAACGCAAGAACTATCTAGCCTCAGTGATATTTCCAAAGTATTCCAAGCTTCAAGCACATTCGCAGAGGAAGTTACACATAACTCTGAACATTCTAAAGTATTCCACTTATCTAAAAGCATTTTAGAGTCAGGTATAAAACAGGAAGTCAAAAAAGAACCAGTAGATGATGACATTGATGACGATCTAATCATTCTTAACTCCAGCGATGACTCGACCAAAAACAGCAGCATAAACACAGAGGAAATTTTACATTTAGAGCCCGAAATTATTCTTAAAGCTGGTTACAGAAAAAGAAAGATCTACCGCTGCAACAAATGCGATTACTCCGGCTACCACCGGGAATATAAAGAACATATATCCAGCCACTGCAACACGGTAGCCAAGAAGTTCAACTATGACACCAGCTACAAATGCACCAAATGCGACGTAGGCTTCCCGAATTTGAAAAAATACTCTCTACACTTCGAAAAGCACGGTTACAGGTACATGTCCTGTCCTCAATGCAAGAACGGCTTTGACAGTGTCACCAAACTTGTGGCGCACGTCAACACTCACATAAAGAACCAGTTCTTTAGAATACAGTTGTTGAACAGCTGCGAGGACACGGATCACTGTAAAGCGTATCAGTGCAAGACCTGTACGGAGATCCAGCCCGTGGACAAGTGGTTCGCGCACTGGGAGGAGCACCTGGTGCTGGTGCAGGAGCCCCCGAAGGCGCCGCTGGAGAACTTCAAGGTGGGGGAGACAGGAGAGCATGCTTTAAATCCGAACTCGTTGAAGGAAGTATTAGTGGTCCTCACAGCGCAGGACCGCTCCGCCGACACCATATACACCAAATCCTGCATCGTCTGCAACCGAGTGTTCGACCGACGAAACGACACCAAACGCCACCTCGTCGAGCACCTTCTAGAAGATGCTTACGCCAACGTAGTCAACAACACGTTGCTCAAATGCCAAATCTGTTCTGACCTGCACAAGAAACCAGATGAATATAAGAAGCATATGAGGGACCATGCCTGCCTCCCGATATATAAATGCGGGTTATGTAATAAAAGTTTCAGTGACTCGAGTAACTTCACTAAGCATAAGAAGATACATAATTTGAAGGCGTTTATCTGTGATGTATGCAGTAAAAAGTTTCAAGCGAAGATGTCTTTGGAGAAACATATGCAGATGCACATGGAGTCGGACCCCATAACCTGTGACCGCTGCCAGAAGGTGTTCCACGACCGCTCGTTCTACAACCGCCACGTCAGGCAGCACCACGAAAAGGCCGCCACTCGCTACAGATGCATGCTGTGCCGCGAGAAATTCACGTCGATCCGCGAAAAATGGGACCACATGTGGTACGTCCACAAACAACGCAAGGAGGAGGCAGACTGCCCGATCTGCGGCATCTCCTACCGCAAGTTCCACGACGTCAAGACACACGCCTACGAAGTCCACGGGAAGCAGATCACGCTGTCCAACCTCTGGAGTCTGCTGAGCAGGATCAAGGTGACCGGGAGAGAGGTCAAACTAACTGGTGACCCGGCGGCCCTGAAGGAAACTGTGACGGTGGTGAAAGACAGTCCAGAGGCAGAGGAGAGTAGTGACGATGACTGTCTGCTGATTGAGGAGGAGAGAGAGACGTTGGTCGTTTATGACTAA
Protein Sequence: MTEIGRKRSRKTKLVPRECADFLDDDLVLQAPQKKPLLEKIKKEPGFIPHESSHQFSVKVEIEDMDGSIPDEDPSDYMKYLFSLSKEAEEEPKELDYADNSLLLEQKLVIPLPEDDRNIVDVRKTQKMLGVLHKKYPEDKEAVLYTRNQWGKVFSEKLALEVKRTPQEALIQATLDRWKLETRQQECNIVAYGTEGLPLQEIVIHGKCLKCAKTYDHHQSNKRDLDAYYYCNYCDERFHNCRALAKHEGTCARNPIRVLAISKAGKEYSFSDFSCEVCQTVFMSNPDLSEHMTICHKVRSDEPIVTKFKTCHLCEQKYFIFNFHACSRKNANYECKHCSAKFHNKMILDHHLKTWEGVYQCRICDKFLQKSCMAGEHYALHSKHFLSVIRCLVCKKIKVFLSEEAWRNHRIKYHRRFDYRRMNCDKVSTHVLLAMGLDQPADTTRRVGVNDYISLVVFILCRLYTLVETPRARPRTSVYMMLSPCLARSGLALVAPPKLQPAPPSNDKFKLTRGETMPLVRVYVPVHKNRAATLEASQNTTIAHDNTVTMRTDDVPENAVIRVKQEKEDIAESKEIDDETILENVQEEMEISKKVYEKSLENKNQLADKNVLENLREVSENKELDDNKVFEILREVSENKEIDDNKVLESSQEVLENKQLEDKIPEYFAEKVIKTEKNDDKQTSISKDTPIEIEKQGKKDIGNIMAELNEFLDIKPDIIIKKEHMTVEETQELSSLSDISKVFQASSTFAEEVTHNSEHSKVFHLSKSILESGIKQEVKKEPVDDDIDDDLIILNSSDDSTKNSSINTEEILHLEPEIILKAGYRKRKIYRCNKCDYSGYHREYKEHISSHCNTVAKKFNYDTSYKCTKCDVGFPNLKKYSLHFEKHGYRYMSCPQCKNGFDSVTKLVAHVNTHIKNQFFRIQLLNSCEDTDHCKAYQCKTCTEIQPVDKWFAHWEEHLVLVQEPPKAPLENFKVGETGEHALNPNSLKEVLVVLTAQDRSADTIYTKSCIVCNRVFDRRNDTKRHLVEHLLEDAYANVVNNTLLKCQICSDLHKKPDEYKKHMRDHACLPIYKCGLCNKSFSDSSNFTKHKKIHNLKAFICDVCSKKFQAKMSLEKHMQMHMESDPITCDRCQKVFHDRSFYNRHVRQHHEKAATRYRCMLCREKFTSIREKWDHMWYVHKQRKEEADCPICGISYRKFHDVKTHAYEVHGKQITLSNLWSLLSRIKVTGREVKLTGDPAALKETVTVVKDSPEAEESSDDDCLLIEEERETLVVYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00656760;
90% Identity: -
80% Identity: -