Eram018562.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388205.1:3460289-3481245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.43 35 6.0 0.2 2 21 1671 1690 1670 1691 0.87 2 7 3.2e-05 0.0026 19.1 0.3 2 23 1805 1826 1804 1826 0.95 3 7 0.007 0.57 11.7 5.4 1 23 1844 1866 1844 1866 0.97 4 7 0.0071 0.58 11.7 4.2 1 23 1899 1921 1899 1921 0.98 5 7 0.04 3.2 9.3 7.2 2 23 1947 1968 1947 1968 0.95 6 7 0.03 2.4 9.7 0.5 1 19 1993 2011 1993 2013 0.96 7 7 0.86 70 5.1 0.3 5 23 2381 2400 2378 2400 0.89
Sequence Information
- Coding Sequence
- ATGGATAGAGTGAACCAGTTGCGCGGCGGCGGCGCGGGCGGCTCGCGGGACTCGTCGCTGGACGACTCGGGGTCCGGGGACTCCTTCCTGACGGCCAACGACACCTCCAAGTACTATTCTCTCTCAGAGGATGACTCCTTCGACATCACTAAGGACGTGTCCCTAGCCAGCACAAGCTCGGACACCGAGCTCACTGACTCGGACTGCTTTCCCAATCTGTCTCCAATTGGAAAGAAAGATCTGCTAGACTACAAGATTGGTAGACAAATTGAAGCCGCCAACATTCTGTCTGGTGGGGTCAACATTTTTGATGACAATGAGAGCTCCTATGATGGCAATGAGCTGGTGATAGATGATAATGTTGAAATTGATAAATCTCCGAATTTGAAGTCACCAGAATCAAGTTTACCATGTCAAGATGACAATGTTGATATTGACAAGGCTTCTACTTCAAAGTCACAAGGGAACCCTGATCCAGGTCAGATGGTTGAACGTGAAGATAAATCATTAGAGAGTTCAGATTCTGTGCAAAATAATGTTGCAATTGAGGAATCTTCCAGTTTAAAGTCACCAGAAGCGGCTGTCCCCTTAGATAAAGATGAAGATTCATTGGAAAATTTAGAGCCTGAGGAACCAGCTGCAGCATTTGACCAGGGAGTGGCCAATCTCCCAATTAATGAACAGCTTGAAGACATCCATCTTCCGTTAGATAATGGTGTAGCAGATGAAGCCGAAATCCATCTTCCGATAGACAATGGTATCGCTGACATAGCAGATATTGCCCGTCTACCAGAGAATGGTGTGGCGGACGTAGCAGAGATTGCTCTTCCGCTAGAGGAAGCAGAGATTGGAGAGGCGAATCTTCCCAATGAAATTGGTGAAGCTAATCTCCCGAATGATAATGTGGAAGAACATTCTGACAATGTGGCAGAAGAGAATGATGATAGGACGGAAGTGGTTCTGCAGATAGATGGGAATAATGTTGCAGCTATAAGTATTGGGACGGGGCTGTATTTGTACCGGAGGGAAGGGCAGGAGGAGGAGCTGGCTGCGGTGCAGATTGTTGAGGGAGAGGAGGCTAGCTTCAAGTTTCTTAAAGTCCGAGAAAACGATGAAGGCAATTTAGAGGTGTATGAAGAAATACAAGAAGTAGTTGTAGTACCTCAAGAAATGCCCATCAGAGAAGTCAGACCTGTAGCAGCGGCAGTCAACGTCGTCGCATGCACGTCGAGCGAAAACAATATACCTGTTGCTGTTTGTGAACCAAGCACGAGCAGAGAAGTGGAAAAGAAAGAGACCACACCAGACAAGGACCCGGCTGTTCCATCCACTTCCAAACAAGACAATGAACCTAATAAAGACCAGGGTGAACCTAAAAATGAGCGTAACGTAAATGGAAAAATGGTCAAAATTAGCGAGTCAAGAAAATCCCCTCTTATGGCATACCATTCTACACCTAATAAAGAAGGGATTCCTTTGACTAAAACAATGGTAGATCAGCAACTACACCCTAACAGGCATTCAGACAATATCAAGAAAACGATAGAAGTTCATACAGACAATTGTAAACATAAGTCTTTTGAGACACCATCAACATCGAAATGTAAGGATTATCTTAGTCCTGATAAAAAATCTGACGAAGGATCTGCATTAGATAAAACAAGTGATAAAGAAAAGAACAAGCCAAGTGAACCGGAAAAGAAAATAGTGCCTGAATCAATTGAGAAGAAAACTGAAGAAGTTGCTTGCAGTTCAAGAAGCGAACCCAGCAAAGTAGAGGTTGCGAAGTCAAATGAAGATAACGCGAAAACTTCGGTGATAGATGAAGTGCTGGAAATAGACATGGCCGCAACTGATAGTGATGAAGAAAAGAAGAAGAAAGCGGAATCTGATGACAAATATAAGAAATCAATTGAAATTCCGAGCACAAGTAGGTGCATTGAAATGCCAACTGCAAGTGTAAGTAAGGAAAATAGAGTTGAAGAAAAACAACTTTTAACACCAATAGCAACAAATAAGGATTTCAAAAATGTAAAGATTTCTACAACTTCTCCATTAGTTGTAGCTCCAACGATGATTGGCCACTCAGAAGCTAAGATTCCCGAAATTTTAAAACTAAATGAAAAACCAGTGGTCACACCTACTGAAATAATTGAATCCGATGATATGGAAGTTGATGAAGACGTTTTAGTTATAGAAGAACAGATTATTGAAAGTCAACCAGAAGATTATGAAATTAAAAAACGTGAAGAGGATACACTTACTCTAGCTGTTGAAAAGAAATCAAAAATAATTGAGCAAATAAAGAACGTTTTGGGAACGGGAGAAGCTAAACCAACGTTTTCTGTCAAAAATAGCATTAGCATTGTTGCAACGCCTGATATCAGCAAATCAAGCAAAATAGATACTACAACAGTAAATTCTGTACAAGATATCAACATCATAAGTAACAGTGATAAGTCAAGAGTAGAAAATAAGTCTGAATTTGGAATCAAAATATCTAGTTTAAATAAAGAAGAAGCTAAAGGCACAAATTCCAAGGATACTCAATTAAACCATAATATTAAGCCAATGAGAAATGAATCGACGCAGGAAATTACAATCCCTAGAGAAAGTTTGGCGCAAAATGTAGAATCGAAGAAAGAATCAACTGAAATTAAACCTATTGAGAAGAAACCCGAAATGACACTTAATGCTGTAGAATCTCTAATTCCAACAGCTATAGTACACCATACAGTCAATAACATACACAACAAATCAGATAAAATAATATTCACATTGGAATCCACAAGCAAAGACATGGAGAAAAAAACAGAAATACCTGTTACAAATACAAGGGATGTAAAAACCTCAACATTAATACCTGTTACAGAGCAACGACACACTGGTTTACCAAACAATACTCAACATTTAGTCAAACCACAAGTTAAATCAGATGTTATACCTACAGTTACAAATGCTCCTGAAGCCAAAAAAGAAATGAACCATAAATTACCATTTACTGCAATTGATCCAAAACCAAAGTCCGTTAATAACAACCACGCACCAGTTCCCTTCGGCAAATGGACTGAAGTGAATCGCCAAGACTTTTTAAATAAAATCAAGGAATCTAAGCCTGTCAACATCTCTAATTCAAACCAAATAAAGCAACCATTCGACTTAAATAGAAGAGATGTTCTGAAAAAGATTGATAGTCAAAGGCAAACCTACAACGCCAATGTTAAAATTCTAGAATCACAAAATAAGGGGAATGCGAAAACAGAAGCATTTGCGAGCAAAACTGTCCCTGCGACTATAACCAAGCGGGAGGCTAAAGTTCCCGTGAAATCAGAGGCTAAACCAACACCGATACTGGAAAAGAAACCGATACCAGAACCAACCCAACAGATCCCTGTAGAACCCACAGTGGTAGCAACAGCCACTGCATCTAGCACATCCAAAAAGGAGCAACAAAGAAAGGAGATAAATAACCAAGATATAATCGATAAAACCGTCGAAGGTATCATCAACAGAGCAGTGTCAGGAAAAAGTCCAGAACCTGTTATTCAGGCAGTCACAGATACACCGATTGTTGAGAGAGTGGAGAAGAAATCTGAACAGAAAACCAACAGCCAACCTACCCTCTTAGACGCTATCGAAATGAAAATGAATGAGCTACACGGAATCCCTTTCGTGGAGAGACCGCCTCATGAACTACCCCGACCCTATTTAACGGAACCTAAAGCTGAAACCCTCAATATACCGCTAAAGGTCTCCAAGATTCCTAAGCTCGTGCCTCTCAATAAATCTCAGCAGAACCTGAAAGACTGCGAGGACGATATGATGCATCTCGAGACTCCGAAGGGAAAATCCTCCAATTCATCTCTAGACCTATCTAAACCAGAAAAGACACTCGTGAAAACTATTGCAGCCCCCGAGAACGTGAGCAAGGATAAAGTAATAACTGAAAACGAATTCGACAAGTTCGCCCGACGCAATTCCGTCACATACGAGAATTGCTTGACCGTGACAGATTCTCACCAGGTCATCCAAACTGTAGTGCCGAGAGAGGCGCCGCCTAAGAAGATCTCGCGAAACGAGCAAATGCTCGCCGAGGCTAAAGCCAAGTCGCCTCACAAGCATCTGCCTGTAAAGCAATACCATCCCAGCAAAGCTGCCAGCAAGTACGTGCCACAAGACAAGCAGTACCAAACCAAGCTCCAACTGGCGTATCAAACCGCGATAACAAAGCGGCGTATCGACAGTCCCATCACTATAATCGAGGACAAACCGGTTAAAGTCGTTTATCTGGACTCTAATGTTTCAGAGTTTACTTCAAATCAGCTAAATGTCCAAGGTCGTGACCTATCGCCGGCCAAACGACCTTTAGAACCCGATGCGGTCACCGTCGGGACTTGCGATTCCCTCGACTCTGACATCTTAGACGCTATCGACGACATCAGGCAAGACGAGGTGAAAACCAAGAGCAAACATCAGCGAAAACAAGTCCTTACCCCCGTCGAAACCCCCGATTTGGAGTTGATCGAACCGGGCGATTTAGGGATCGAGGTTTCCCCTAAGAAGAAGCGGAAGACGGAAGACCGGATCGAGAGAAGGAATCTCGTGCCGAAAAAATCCTACCTTCTCGCCAGAAGCAGCACCCCTGCTGAAATAGAAGTGCCTAGGCAAACAGAAACACGGCCAAATCCGGCTCCACCTGTAGTCCACAACGATGCGGTGTCGGCCATAGACAGCTTAGTGAAGGCGGCAGAGCTTCTCGAAAATCAGTCGGAAAATATGAACGTTAGCGTCCAAAGCTTGGACAGTTCTCAAAACACACCAGTTAAACGCGGGCGTGGCCGCCCTAGGAAGAATCCTTTACCGGATGCGGATACTACGGTCAGTCCGCAGAAGAAACCTAGGCTCATCGACGCTAAACCTAGACATATCAGCAGCTCTGATGAAGATTCCAGCGATGACGATCTAATGATCAAGGAGAACTGGACGATGGGGAAGATCAACGAGAAGATTGTGTGTCCCATCTGCAACAAACTGTTCCGGTCGGAGAATGTTGTGTTTAAACACGTGAAGCACTGCACCGGGCCTTCGCCGAGCCGCTCCGACGGGAAAAGCAGCCCGAGGCGATCTCGACTGTCGAGAGAAAGTGAGTCCAAGTCGAGAGAGAGCGAGACCAAGTCGAGAGAGTCAACAAAATCCCGCGGCTCGAGATCCAACGATCCCGACGAAGACTTGTCTCCAGTCAGAAAAACTCCTAAGAAACGGAAGTCGAAGGACTCCGGGAAATCTTCCCCGAGCGACGACGTCATTCCGGTCGAAACTGATTCCAAAGAGTCTGAAAAGAATGACTTACCCGCGAAGAATGAGCCACGAAAGACCCTTAAACCTAAATTAAACCCGAAAAGTAATAATCTCGTCTGTGAAATCTGTGGTAAAAGCTTCAGGCAGCTTTCATACCTCGTCAGCCACAAGTTGCAGCACAAGAAAGAAGAACATAAAAATACCAATGAACCGGCAACGGAGAAATCAGTATTTAGTTGCGAGACATGCAAGAAAGAGTTCAGGAAACTGCATCATTTAGTGCAACACAGGCTGATCCATAATTCGGTACAGTCGAGAGCGCTGAGGAAGACTTCCTCCGAGCAGAAGGAGCTTATCAAAAGCCAGGATGCGAAGTTGGAAGATCAGAGCACTGGTTTCCGCTGCGAACCCTGCGATAAGTCCTTCAGGAAACTACACCACCTGGTGGAACACAGAGAGACCCATGACGGTATCAACCGACAGAGGTCCAACTCGATAACGCAAGTCCCAGAAAAAGAAAAGCCGACGCCGCCGCCGCCGCAGTGTGACATCTGTAAAAAAACCTTCAGGAAACTCCACCATCTGATTGAGCATAAAGAACACCATCTAGAGACGAGCTCGGAGAAATCCGACGACCAGAAAAGCGTGAAAAGCTCGTTGTCCACTAAAGACATTATTCACGAATGCAATCTGTGCTACATGGTGTTCCCTAACGAACATTCACTGAACAAACACGCGGTCAATTGCCTGAGGAAGAAAAAGCAATCGGCGGCTAAACAGGCGGCCGCCCAAGAGGATAAGAGCGCAGAAGACGCCACGGAAACTGTACTAATCGAAGAAAGTAAAACAGAGGCTGTCAAAGAAGCAGAACCCGTGGAGACGAAAGTTGAAGAAAAAGTGGAGAAACCTCCAGAAACACCAATAGATCCTCCAAAAGCGGAAGTCCCTCAAACAAAGGAAAATCCTCCTAAACCGGCTACAGTTCAGCCAGTTGAAAAAGAAAAAGAGGAGCCCAAAGAGGTTGAAAAGAAACCGCCGGCGCCTGAAACTCCGACCCCTAAACTGAAACCCACAGAAGCGCCTAAGAAAGTAGTAGACGAGATTATTGTGATCGAAGACACGCCTGTGAAAAAGAAACCTATTAAAGATAAAGTCGCGCCATCTGTGACGAAGCGGCAGAAAAGCGCTCCGTCCGAGAAGCGCGCGCCTTCCAGAGATGACGAAGTCCGCTACATGTTAAACCCCGACTTCAGGGCTACAGAGACTTCAGAGAGCAAAACCTTCACGAAAATCCGCGCGGAAAAGCGGAACTCTCTACAATTCGAGCGGCCGCAGAAGGACGCAGTGAGGAGATCGCTGCTCCAACAGCCTCCTAAGATCTCGCGTGCCCGCGCCAAGTCTGATAACGTCGCGCCTCCAAAACCGATGAAACCGAAAGAAAAAGAGCCTTCAACAGACTCCGATGACAGTGACGTGAAGTATTCCTTCCCACCAGCTCCTGTTAAAACGGAGAAGCAAGAAGCTTCAACGACTGAGCCGAAGCGGAGAAAGACAATGGCAGATAAGCAGGAGATTACAGAAACTGAGCCGAAACGGAGAAAGACCGTGGCTGAGAAGCAGGAGGTTACAGAAACTGAGCCGAAACGGAGAAAGACCATGGCTGAGAAGCAGGAAGTTACAGAGGCTGAGCCGAAGCAAAGGAAGACCATGGCTGATAAGAGGAAATCTCTAAGCGGGATAGCAAAACGGAAATCGCTAGGGAAAGCCATTGTCAAGGCAGCAGCCAAGCCGTCAGCCGCAAAACCGATCAAACGACGCACAGCGGCAGCCGAGCACCGCTGCGACTGCGGCCAGCTGTTCAGTAGCGCGGCCCTGCTCGCACGCCACGCCTCTCTGGCTCACACGCCGCCGCGCGTGCGCCGCCCCCGCGACGCCGACGCAGGTAACTCTAGTGTCGCGAGAAAAACTGTCGAAGCGAGAAAAAATGTCGAAGCCACGAGGAAAAGTGTCGAGCAACCGAAGAAAAGTGTCGCGGCTGACGCAGGTAAACCGAACCGCAAATCCATTGTAGCGAGCAACCGCAATAGTGTCGAGCAAAGGAAAAGTGTTGCCAGCAAGGACCGCAAGTCTAGTGTCGAAAATAAAAGTGTAGCTACTGTGGCTAGCAAGGACTGCGCTCGGAAAACTCCGAAGACGCCCAGCTCTAGGAGTCGCGTGCATACTGGTGTACCAATGCCTGAGAAGCGTCCGTCGCGAAAGTAA
- Protein Sequence
- MDRVNQLRGGGAGGSRDSSLDDSGSGDSFLTANDTSKYYSLSEDDSFDITKDVSLASTSSDTELTDSDCFPNLSPIGKKDLLDYKIGRQIEAANILSGGVNIFDDNESSYDGNELVIDDNVEIDKSPNLKSPESSLPCQDDNVDIDKASTSKSQGNPDPGQMVEREDKSLESSDSVQNNVAIEESSSLKSPEAAVPLDKDEDSLENLEPEEPAAAFDQGVANLPINEQLEDIHLPLDNGVADEAEIHLPIDNGIADIADIARLPENGVADVAEIALPLEEAEIGEANLPNEIGEANLPNDNVEEHSDNVAEENDDRTEVVLQIDGNNVAAISIGTGLYLYRREGQEEELAAVQIVEGEEASFKFLKVRENDEGNLEVYEEIQEVVVVPQEMPIREVRPVAAAVNVVACTSSENNIPVAVCEPSTSREVEKKETTPDKDPAVPSTSKQDNEPNKDQGEPKNERNVNGKMVKISESRKSPLMAYHSTPNKEGIPLTKTMVDQQLHPNRHSDNIKKTIEVHTDNCKHKSFETPSTSKCKDYLSPDKKSDEGSALDKTSDKEKNKPSEPEKKIVPESIEKKTEEVACSSRSEPSKVEVAKSNEDNAKTSVIDEVLEIDMAATDSDEEKKKKAESDDKYKKSIEIPSTSRCIEMPTASVSKENRVEEKQLLTPIATNKDFKNVKISTTSPLVVAPTMIGHSEAKIPEILKLNEKPVVTPTEIIESDDMEVDEDVLVIEEQIIESQPEDYEIKKREEDTLTLAVEKKSKIIEQIKNVLGTGEAKPTFSVKNSISIVATPDISKSSKIDTTTVNSVQDINIISNSDKSRVENKSEFGIKISSLNKEEAKGTNSKDTQLNHNIKPMRNESTQEITIPRESLAQNVESKKESTEIKPIEKKPEMTLNAVESLIPTAIVHHTVNNIHNKSDKIIFTLESTSKDMEKKTEIPVTNTRDVKTSTLIPVTEQRHTGLPNNTQHLVKPQVKSDVIPTVTNAPEAKKEMNHKLPFTAIDPKPKSVNNNHAPVPFGKWTEVNRQDFLNKIKESKPVNISNSNQIKQPFDLNRRDVLKKIDSQRQTYNANVKILESQNKGNAKTEAFASKTVPATITKREAKVPVKSEAKPTPILEKKPIPEPTQQIPVEPTVVATATASSTSKKEQQRKEINNQDIIDKTVEGIINRAVSGKSPEPVIQAVTDTPIVERVEKKSEQKTNSQPTLLDAIEMKMNELHGIPFVERPPHELPRPYLTEPKAETLNIPLKVSKIPKLVPLNKSQQNLKDCEDDMMHLETPKGKSSNSSLDLSKPEKTLVKTIAAPENVSKDKVITENEFDKFARRNSVTYENCLTVTDSHQVIQTVVPREAPPKKISRNEQMLAEAKAKSPHKHLPVKQYHPSKAASKYVPQDKQYQTKLQLAYQTAITKRRIDSPITIIEDKPVKVVYLDSNVSEFTSNQLNVQGRDLSPAKRPLEPDAVTVGTCDSLDSDILDAIDDIRQDEVKTKSKHQRKQVLTPVETPDLELIEPGDLGIEVSPKKKRKTEDRIERRNLVPKKSYLLARSSTPAEIEVPRQTETRPNPAPPVVHNDAVSAIDSLVKAAELLENQSENMNVSVQSLDSSQNTPVKRGRGRPRKNPLPDADTTVSPQKKPRLIDAKPRHISSSDEDSSDDDLMIKENWTMGKINEKIVCPICNKLFRSENVVFKHVKHCTGPSPSRSDGKSSPRRSRLSRESESKSRESETKSRESTKSRGSRSNDPDEDLSPVRKTPKKRKSKDSGKSSPSDDVIPVETDSKESEKNDLPAKNEPRKTLKPKLNPKSNNLVCEICGKSFRQLSYLVSHKLQHKKEEHKNTNEPATEKSVFSCETCKKEFRKLHHLVQHRLIHNSVQSRALRKTSSEQKELIKSQDAKLEDQSTGFRCEPCDKSFRKLHHLVEHRETHDGINRQRSNSITQVPEKEKPTPPPPQCDICKKTFRKLHHLIEHKEHHLETSSEKSDDQKSVKSSLSTKDIIHECNLCYMVFPNEHSLNKHAVNCLRKKKQSAAKQAAAQEDKSAEDATETVLIEESKTEAVKEAEPVETKVEEKVEKPPETPIDPPKAEVPQTKENPPKPATVQPVEKEKEEPKEVEKKPPAPETPTPKLKPTEAPKKVVDEIIVIEDTPVKKKPIKDKVAPSVTKRQKSAPSEKRAPSRDDEVRYMLNPDFRATETSESKTFTKIRAEKRNSLQFERPQKDAVRRSLLQQPPKISRARAKSDNVAPPKPMKPKEKEPSTDSDDSDVKYSFPPAPVKTEKQEASTTEPKRRKTMADKQEITETEPKRRKTVAEKQEVTETEPKRRKTMAEKQEVTEAEPKQRKTMADKRKSLSGIAKRKSLGKAIVKAAAKPSAAKPIKRRTAAAEHRCDCGQLFSSAALLARHASLAHTPPRVRRPRDADAGNSSVARKTVEARKNVEATRKSVEQPKKSVAADAGKPNRKSIVASNRNSVEQRKSVASKDRKSSVENKSVATVASKDCARKTPKTPSSRSRVHTGVPMPEKRPSRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656703;
- 90% Identity
- iTF_00659045;
- 80% Identity
- -