Eram029040.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- gfi1b
- Assembly
- GCA_947578815.1
- Location
- OX388225.1:13307486-13328873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 14 7.3 0.7 1 23 228 250 228 250 0.98 2 10 0.00073 0.059 14.8 0.1 2 23 258 279 257 279 0.96 3 10 0.062 5 8.7 0.3 2 23 314 335 313 335 0.96 4 10 0.022 1.8 10.1 1.3 2 23 339 359 338 359 0.96 5 10 0.0022 0.18 13.2 0.3 1 23 367 390 367 390 0.94 6 10 0.0013 0.11 14.0 0.9 3 21 400 418 399 419 0.95 7 10 8.5e-05 0.0069 17.7 0.5 1 23 431 454 431 454 0.93 8 10 0.0011 0.086 14.3 0.1 1 23 460 483 460 483 0.97 9 10 1.9e-06 0.00016 22.9 2.8 1 23 492 514 492 514 0.97 10 10 0.004 0.32 12.5 0.7 1 23 520 543 520 543 0.96
Sequence Information
- Coding Sequence
- ATGGCAGCTTTCAGACTAAAAGCTCTGAAGGCACAAGCCAATCTTGAAACTTTGCGAAGGGAACCGTGGACTGCACTCCACAGTCTCTCCAAACTGGGAGTATCAAAAGGCATAGATTTAGAAGTAATTGAGTTACCGGAACAGCCAGACCCTCTCATTTTAGACAAGATTAAATCAGAATCTCACATAGATGTTGAGCTTGATGAGAAAGTATTAGGCGAACAATATAATGAAATAGGGGATGAAAATATTGAAATAGAGCTGGGTCCACACTGCACGCTTGCCTCGGGCGAGGCGTGCGCCCGAGGCATGCGGACCGTTCGCCTTTCTGAGTGCCCAACTGTTTGCGTGTCCGAGGCAACCGCGCGCAGCAAGGGCGATTTTACCTCCAAACACGCCGCGGCCCCTTTGAGATCGGCCAAAAAGCAAACGCTCGGCTCGGGCACTCCACTTTCCTTCCCACCTCTACTGAACGAAACTTCTACACAAGAAAAATCTGCATCACAAGATATTAATATAGAAATAGAAAAACCACAAAAATCAACAGATGCACCCGAAATACCCAAAGATTTTCAAACTGCAACCAACACGTTCTCAGAAGAGAGATTGACGGAAGAAGAGATGAGGAGATGGTGGGAGAGTAAGAGGGAGAATGAGTTTTATTCGAAGAGTATTCCTGTTTTTCGTTGTGAGCAGTGCGTGGAGCCCTTTCTTACGAGGAGGTCATTTTTAGGACACATGAAACTGCATACTGAGATGTTCGGAGCGCTGTCGTGCGACATATGTGAGCTGCGGTTCAGCAAACAGGGCGCGCTAGCGGCCCATAAGAACAACCACTATAGACTGCTGAAGTGTAGTTACTGCACCCACAAGTGGGACAACCCCAACTCGATGCGACGGCACTGTGAGACCGAGCACCGCGTACCCGTCAGCGAGTGGAGCTGCGAAGTGTGCCCTAGACAACTACCTTCGCACGGCAGCTTCCTGAACCATCTGAAGGCCCACGGCGCGAAGCCGTGTCGGCAGTGCGGGAAGAGGGTTAACACCACTAGCATGAACAGGCATATGCTCACGCACGGCCCCAGCCTGGAGAAGAAGTTCGAGTGCGCGGAGTGCGGCGCCAGGTGCCGGACCAAGGCCCAGATCAAGAGCCATATCTTGGGGGTCCACCGTACAAAGGTCGACACACGCGCGTTCTGCGTCGATTGCAACAAGCAGTTCCGAAACATGTCCGCGTACAGGACACACATGAAGTTCGCGTCGAAACACGTCGCCCCGGACCTGCTACGATACAAGTGTGAGCAATGTCCCCGGGCGTATACCTCTCGCAGGGATCTGCGCACACACGTCGAGGGGAAACACAGCGAGCAGGGCAACTACCCGTGCGAGGTGTGCTCCGCGCGCTTCCGGAACGCGTCAGCGCGCGCGGCGCACCGGCGCGTGCGCCACGAGGGTCGCGCGCTGCCGCGGAACCACATGTGCGACCACTGCGGGAAATCCTTCGCCAGTAAGGCGCAGTTGTCGTCGCACGTAAACACGCACACAGGCGCGCGCCCGTTCGTGTGCCAGCTGTGCGGGGCGGACTTCGGGCACAAGAGCGCTCTCTACCTGCACGGCCGGTACAAGCACAAGATTCAGAAGAAAACTAAACCTGGGACAGTTGCCGTGAAGAATAGTGTTACAGACAGTGGAAATCATAACAGTGGACAAGATGGAAGCTTAACACCTTAA
- Protein Sequence
- MAAFRLKALKAQANLETLRREPWTALHSLSKLGVSKGIDLEVIELPEQPDPLILDKIKSESHIDVELDEKVLGEQYNEIGDENIEIELGPHCTLASGEACARGMRTVRLSECPTVCVSEATARSKGDFTSKHAAAPLRSAKKQTLGSGTPLSFPPLLNETSTQEKSASQDINIEIEKPQKSTDAPEIPKDFQTATNTFSEERLTEEEMRRWWESKRENEFYSKSIPVFRCEQCVEPFLTRRSFLGHMKLHTEMFGALSCDICELRFSKQGALAAHKNNHYRLLKCSYCTHKWDNPNSMRRHCETEHRVPVSEWSCEVCPRQLPSHGSFLNHLKAHGAKPCRQCGKRVNTTSMNRHMLTHGPSLEKKFECAECGARCRTKAQIKSHILGVHRTKVDTRAFCVDCNKQFRNMSAYRTHMKFASKHVAPDLLRYKCEQCPRAYTSRRDLRTHVEGKHSEQGNYPCEVCSARFRNASARAAHRRVRHEGRALPRNHMCDHCGKSFASKAQLSSHVNTHTGARPFVCQLCGADFGHKSALYLHGRYKHKIQKKTKPGTVAVKNSVTDSGNHNSGQDGSLTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656479;
- 90% Identity
- -
- 80% Identity
- -