Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388202.1:2499310-2509685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.044 3.6 9.2 3.3 2 23 22 43 21 43 0.94

2 13 2.5e-06 0.0002 22.5 1.7 1 23 81 104 81 104 0.96

3 13 0.021 1.7 10.2 3.2 1 23 106 128 106 128 0.97

4 13 0.034 2.7 9.5 0.1 1 23 162 184 162 184 0.97

5 13 0.099 8 8.1 3.7 1 19 247 265 247 269 0.89

6 13 0.0013 0.1 14.0 0.7 1 23 275 298 275 298 0.92

7 13 0.0046 0.37 12.3 2.3 2 23 309 331 308 331 0.96

8 13 0.00074 0.06 14.8 0.1 3 23 338 360 336 360 0.92

9 13 0.032 2.6 9.6 0.1 3 23 368 388 368 388 0.97

10 13 0.029 2.4 9.7 0.2 1 20 393 412 393 415 0.95

11 13 0.023 1.8 10.1 2.3 1 23 421 443 421 443 0.97

12 13 0.00057 0.046 15.1 1.9 1 23 449 471 449 471 0.98

13 13 0.0013 0.1 14.0 1.3 1 23 477 500 477 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.044	3.6	9.2	3.3	2	23	22	43	21	43	0.94
2	13	2.5e-06	0.0002	22.5	1.7	1	23	81	104	81	104	0.96
3	13	0.021	1.7	10.2	3.2	1	23	106	128	106	128	0.97
4	13	0.034	2.7	9.5	0.1	1	23	162	184	162	184	0.97
5	13	0.099	8	8.1	3.7	1	19	247	265	247	269	0.89
6	13	0.0013	0.1	14.0	0.7	1	23	275	298	275	298	0.92
7	13	0.0046	0.37	12.3	2.3	2	23	309	331	308	331	0.96
8	13	0.00074	0.06	14.8	0.1	3	23	338	360	336	360	0.92
9	13	0.032	2.6	9.6	0.1	3	23	368	388	368	388	0.97
10	13	0.029	2.4	9.7	0.2	1	20	393	412	393	415	0.95
11	13	0.023	1.8	10.1	2.3	1	23	421	443	421	443	0.97
12	13	0.00057	0.046	15.1	1.9	1	23	449	471	449	471	0.98
13	13	0.0013	0.1	14.0	1.3	1	23	477	500	477	500	0.97

Sequence Information

Coding Sequence: ATGGCGTCCGAGACCGGCCCGCAGGCCCTGAAGCTGACCACGATCGACCTGGTCGGCGGCATCCACTGCAGCATCTGCCGCTTAACATTTAAAAATAAGAAGGAATATGACACCCACTATTCCCAACATAACCTTGGCAAAGATGAGATTGTCTACACTTGTGTGATTTGTCTCAAAGACATAGCGGGGTACCCGAGCTTCCGCGGACACTGCTACACCATACATGTCATCAAGGACAGATTCGAGTGTGAGGATTGCCACAAATTTTTCTCCAAGTCATCATCCCTGAAGGACCATATTGCATCGGTACACAAATTTCAGTGCTCTTGCTGCAAGAGAGAATTCCCAACCAAAAAAGAGCTGCAACTTCACAAAATCATCCACATGAATGACAAGCCCCCGTTCAACTGTCAGACGTGCAACGAGAAAGTTGACTGCATTGATGCATGCGAGCTGCACATAGACCTGCACTCCGTCTCCCTCTACTCATGCCCCGTCTGCAGCGAGAAACTAGACACCAAAACACAAGCCATAAACCACCTAACCATCCATTTTGGCGACGTACTTAACAATTCTAACGACAGTGATGATTCAGACTCTGAATACAACGATAAACCGGAGGATAGCTCCATCGATTTGCTTGGAGGCATACTCTGTAAAGTCTGTCTTACGTTCCACAAGAACCGGGCGGAGATGGATCTCCACTTCAGTCAGGAGCACCCGGAGATGAGTGTTTCGTATGTCTGTAATATCTGCGGGAAGGACTTCGAGAAGTATGCGCAGTTTGGCCACCATTGCTACGAACATATCACCAAGAACAGATTCAAATGCGAGTCCTGCGAGAAATCCTTCAGCCGCCTAGCCCGCCTCGTGACCCACACCGAGGCGTTCCACGCGCGGCCCGGCGGCGGCGGCAAGCCGCTGTCCTGCCCGCGTTGCGATCAGCACTTCGCCAGCGAGTTCCGCTTCCGCCAGCACCAGCGCATGGAGCACGACATCTGCGTCATCATGTGCAGCCAGCCAGACTGCGGGGAGATCTTCGACACGCCCAAACAGCTGGTGCTCCACCAGAAGCAGCACAAGCCGTCCAGCGAGCTGTGGTGCCGGCTCTGCGGGCTCCAGTTCAGCTCGCGCGGCGCCGCCGAGCGCCACCTGGACGTGCACCGCAAGAAGACCTTCTCCTGCCCCGTCTGCGCGCGCAAGTACGGCGAGAAGTATCTCCTGATGAAGCACATACCCCAGCACTTCGAGACAGTTATACACATGTGCAAGGTCTGCGGGAAGCTCTACAGCGCCAAAAACAGACTCATCCAACACTCGAAAACGCACGCCAATGTGAAGAACTACAACTGCTCGTTCTGCGCTAAAGGCTTCACTTCCATTTACAAGCTCAAACAGCATCAGAACATGCATACTGGTGTACGCCCGTACCAATGCGTGGCATGCACTAAAGACTTCACCAACTACTCCAACTGGTACAAGCATTTGCTGAAAATGCACAAGATTGATCCGAAAACAGTGAAGAAACCGATTATAAAGAATCTCGAAAAAGAAAATGTGAAAGACAACTCGGATCAAAACAGTCTAGCTGAAATGGATACTTTAAGTGAGATGCCTGATAACGACATGTCGCAAGAGCTGGTGAAGGGGTTGGAGATGAAGGAGACCTATCTGTTCATGGAGCCGGTGCACGAGGCGGTGGACCTGGACAGCATCAACCCGTCCATCGCGCCAGGGACCGTGGAGTTCGCGGTCATGCCACCTGCTGCAACACTTGTTCCAGACGCAGAATTCCCGACCGAAGCCCCACTAGGCATGCCCTGCGAGTACGGGCCGGACTTCACGGTGGCGGACTGCAGCGGCCGGCTGCTCCACCTGGACGACCACATGCTGCCCCACATCGACCCGCTGCTCACCATCAACACCGACTACCAGTACCCGGAGCCCGACAAGTGGGAGCCCCTCATCATCAAGTGCGAGGGCTTCGGGGGCGACAGCAGGCTTGCGGTCATGAATACAGACATATTTTGA
Protein Sequence: MASETGPQALKLTTIDLVGGIHCSICRLTFKNKKEYDTHYSQHNLGKDEIVYTCVICLKDIAGYPSFRGHCYTIHVIKDRFECEDCHKFFSKSSSLKDHIASVHKFQCSCCKREFPTKKELQLHKIIHMNDKPPFNCQTCNEKVDCIDACELHIDLHSVSLYSCPVCSEKLDTKTQAINHLTIHFGDVLNNSNDSDDSDSEYNDKPEDSSIDLLGGILCKVCLTFHKNRAEMDLHFSQEHPEMSVSYVCNICGKDFEKYAQFGHHCYEHITKNRFKCESCEKSFSRLARLVTHTEAFHARPGGGGKPLSCPRCDQHFASEFRFRQHQRMEHDICVIMCSQPDCGEIFDTPKQLVLHQKQHKPSSELWCRLCGLQFSSRGAAERHLDVHRKKTFSCPVCARKYGEKYLLMKHIPQHFETVIHMCKVCGKLYSAKNRLIQHSKTHANVKNYNCSFCAKGFTSIYKLKQHQNMHTGVRPYQCVACTKDFTNYSNWYKHLLKMHKIDPKTVKKPIIKNLEKENVKDNSDQNSLAEMDTLSEMPDNDMSQELVKGLEMKETYLFMEPVHEAVDLDSINPSIAPGTVEFAVMPPAATLVPDAEFPTEAPLGMPCEYGPDFTVADCSGRLLHLDDHMLPHIDPLLTINTDYQYPEPDKWEPLIIKCEGFGGDSRLAVMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00658879;
90% Identity: iTF_00659762; iTF_00656564; iTF_00657654; iTF_00658879;
80% Identity: -