Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388225.1:752188-804751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00046 0.037 15.4 0.1 1 23 583 605 583 605 0.98

2 16 0.0014 0.11 13.9 4.3 1 23 673 696 673 696 0.95

3 16 0.42 34 6.1 0.0 3 23 703 724 702 724 0.89

4 16 0.0014 0.11 13.9 0.1 1 21 733 753 733 757 0.91

5 16 0.052 4.2 8.9 0.1 3 21 762 780 761 783 0.89

6 16 0.52 42 5.8 0.7 2 23 789 811 789 811 0.96

7 16 0.00061 0.049 15.0 0.1 1 23 908 930 908 930 0.98

8 16 0.00026 0.021 16.2 3.5 1 23 936 959 936 959 0.97

9 16 0.002 0.16 13.4 1.4 2 23 967 989 967 989 0.95

10 16 0.00046 0.037 15.4 0.1 1 23 1404 1426 1404 1426 0.98

11 16 0.00023 0.019 16.3 0.1 1 23 1766 1788 1766 1788 0.98

12 16 0.41 33 6.1 6.4 1 23 1847 1870 1847 1870 0.94

13 16 0.2 16 7.1 0.0 3 23 1877 1898 1876 1898 0.92

14 16 0.0023 0.19 13.2 0.1 1 22 1906 1927 1906 1930 0.90

15 16 0.028 2.3 9.8 0.4 2 21 1934 1953 1933 1956 0.87

16 16 0.021 1.7 10.2 2.2 1 23 1961 1984 1961 1984 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00046	0.037	15.4	0.1	1	23	583	605	583	605	0.98
2	16	0.0014	0.11	13.9	4.3	1	23	673	696	673	696	0.95
3	16	0.42	34	6.1	0.0	3	23	703	724	702	724	0.89
4	16	0.0014	0.11	13.9	0.1	1	21	733	753	733	757	0.91
5	16	0.052	4.2	8.9	0.1	3	21	762	780	761	783	0.89
6	16	0.52	42	5.8	0.7	2	23	789	811	789	811	0.96
7	16	0.00061	0.049	15.0	0.1	1	23	908	930	908	930	0.98
8	16	0.00026	0.021	16.2	3.5	1	23	936	959	936	959	0.97
9	16	0.002	0.16	13.4	1.4	2	23	967	989	967	989	0.95
10	16	0.00046	0.037	15.4	0.1	1	23	1404	1426	1404	1426	0.98
11	16	0.00023	0.019	16.3	0.1	1	23	1766	1788	1766	1788	0.98
12	16	0.41	33	6.1	6.4	1	23	1847	1870	1847	1870	0.94
13	16	0.2	16	7.1	0.0	3	23	1877	1898	1876	1898	0.92
14	16	0.0023	0.19	13.2	0.1	1	22	1906	1927	1906	1930	0.90
15	16	0.028	2.3	9.8	0.4	2	21	1934	1953	1933	1956	0.87
16	16	0.021	1.7	10.2	2.2	1	23	1961	1984	1961	1984	0.97

Sequence Information

Coding Sequence: ATGGACATAATACGGACTCAGTCCTCAAAGGAGGACTTGTTGTGCTGCCGCGCTTGTCTCGATACCGATTGTAAACTGCTCAACATTCAGGAATATAAACTTTACGAAGCCTTTTCTCGCATCTCCGGGACCTTTGTTTTAAAGGACCAATTCCCACAATACCTGTGCACACACTGCCGCACCCTGCTGCTGAAGTGTATGTCTTTCAAAGACATGTGTCTTCGGACAGAGCAGCTCCTCGAGCGGGAGCTACTCAAGGGAGAGCTGAATACGGATTGTATTCGCAGAATAGACTGCTCCCACCGGCTTCTCAACCTGACTTTATCTGTAGTCCACACCTTTGACTGTGTTGAGGACCCGCATACAGAAGATATAAAAAAAGAACCAATTGACATAACTAACACAGATGAACCAACCATAGAAACAACTATCAAAAGTGAAGTAAATATGGAAATAGATGAAGTTAACTTGAGTGAAACAACCATAGATGAAGTTAACTTAAATGAAACAACCATAGATGAAGTTTACTTAAGTGAACCAACCATAGATGAACTTAACTTAAGTGAAATAATCGTAGATGAAGTTAATTTAAGTGAAACAACCATAGATGAAGTTAACTTAAGTGAAACAACCATAGATGAAGTTAACTTAAGTGAAACAACCATAGATGAAGTTAACTTAAATGAAACAACCATAGACGAAGTTTACTTAAGTGAAACAACCATAGATGAACTTAACTTAAGTGAAATAACCGTAGATGAAGTTAACTTAAGTGAAACAACCATAGATGAAGTTAACTTAAGTGAAACAACCATAGATAAAGTTCACCTAGCACCAAATACAAATTTAATTAACTTAGGTGCACCAAACACAGGTAAAGCACAAATAGAGACAGTTGCCATAGATAGTGGTAAACAGAAAGCTGATTCAAAAATAGAACTTGTGAAGAGGAAAGATAAAGCTAAGATCAATATTGATAATGTAGTTGGGGATGTATTTGTAGTGAATAAAATGAAAACTGTTAAAACTTATAAAAGAAATATAGCCACAGTGAAGAAAAAGATGGATATAGAAATCCAAGCGTACAGTGATAAAGTTAATGAAAAATTAGACAAAAACGAATCAAATATAGATCTAGATACAGATATGAGTAAAGCAAATATAAACGTAAGTTACAAAAGTATAAACACTGCTTATGCAAGTATAATCCATGATGACATAGGCGACTCAGACATAGATGACATCAATGAAGTAAAAGCACATATGTACATAGTTGATGTTGATAATATACTAAAGAAAGCTGTGAAAAAGACTAAAAAGTGTAAAAGAAACATTGGGATTACAGTCAAGAAGAATATAGAGAATTCTAAAGAAGCTGTGAAAAAGACTAAAAAGTGTAAAAGAAACATTGGGATTACAGTCAAGAAGAATATAGAGAACTCTAAAGAAGCTGTGAAAAAGACTAAAAAGTGTAAAAGAAACATTGGGATTACAGTCAAGAAGAATATAGAGAACTCTAAAGATAATTCTGATAAAGCAGATGAAAAACCAGTGAAACAAGTGAAAAAGCGACGGAGGAAGGAAAGAAAGATCAAGTATAGGAACCCGGAAAATGACTATTTGCCGGAGTTTGATTTTGCCAAGTTTGAGAGTGATTATGGCGTGAAAATTGTTACTTTGAGTAAGCAAGAGCAACTGGAAGAGATCGCCGCGCGCAAGCAGTCCACAAATTACACCACGGCGCAGTTCCCGTGCGAGGACTGCGGGAAAGGCTTCGACATGGAGCCAGCATACAACAACCACCGCCGGCGGCACAGCCCTAGCGCGGGCTCGCACGCGTGCGAGATATGTCTCGTGCGGTTCAAGTTGGCGTGCCTGCGCCACCGCCACCAGGACCTGCACAAGCTCAAGTTCGTCTGCGAGTGCGGGTTCGTGTCCCGGGCCAGGTATCTGGATATGGATGTGTTTTGCAGATGGACAGCGAAGTTGCACCACGAGATGCACAAAGGCAGGCGGTTCTTTTGCAAGCACTGCGGGAAAGGATTCAGCAAGCGGACGTCCTACCTGACGCACGTGCGTCTGTCGCACCCCGCGCTGAATGTCGCATGCGGCGCGTGCGGCGAAACGTTCGTCAGCGAACAGGGGCTCAAGATGCACGCGTCGCTGATGCATTCCGAGATCATGAAACCGCAACAGTTCAAATGCCCAACATGTGCAGCGAGCTTCGTCAGTTCAGACGCGCTGAACAGACATACAGACAGCGGCGAGCACGCGGGCAGCGCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGAGGCGCTACAGGCGCACGTGGGAGAGAGACATCCGAGCGACTCGCGTCGGTGTGAGGAGTGTCGTGCGACGTTCTCGAGCGGCGCGGCGTTCGACACGCACTTCCGGCGGAAGCACCTCAACGAGCGCTACTCGCCCGCCGGCCGCGCCGCTCGCAAGAGCCCCGCGCGGCCCGGCCCGCGGCGAGGGCCGTCGAGCGGCCAGTTCGTGTGCGAGCAGTGCGGACACATATTGCCGGTATACTCTAGGATAAACTTCATGACAGCAACTCAACGAGCGCTACTCGCCCGCCGGCCGCGCCGCTCGCAAGAGCCCCGCGCGGCCCGGCCCGCGGCGAGTGCCGTCGAGCGGCCAAGCGCGGCGTTGTTGCGGTACCATCAGAACGGGCACCTCGCCGTGAAGCCGTTCCCGTGCGCCGAGTGCCCGAAGACCTTCGCCACCAAAGCCGCCAGGAACTCGCACGCTCGGTCGCATAAGGGGGAGAAGCCGCACAAGTGTTCCGTGTGCTCGCTCTCGTTCACGGAGAAGGCGAACCTCAAGCGGCATCACAATGTGGTGCACCTGGGCGTACACGCGAACGCGTCGTGCCATTTCTGTGCGCGCGTGTTCACCGCCAAGTCCAACCTGCGTCTGCACATCAGCTCGGTGCACAACGGGCAGCCCTGGCCCGCGAGGGTGCGACGGCGGAAGGTCTCAAAGGATCACTTCCCACAATACATGTGCACACACTGCCGCACCCTGCTGCTGAAGTGTACGTCTTTCAAAGACATGTGTCTTCGTACAGAGCAGGTCCTCGAACGGGAGCTACTCAAGGGAGAGCTGAATACGGATTGTATTCGCAGAATAGACTGCTCCCACCGGCTTCTCAACCTGACTTTATCTGTAGTCCACACCTTTGACTGTGTTGAGGACCCGCATACGGAACATATAAAAAAAGAACCAATTGACATAAATAACACAGATGAACCAACCATAGAAACAGCTATCAAAAGTGAAGTAAATATGGAAATAGATGAAGTTAACTTAAGTGAAACAACCATAGAAACAGCTATCAAATGTGAAGTAAATATGGAAATAGATGAAGTTCACTTAAGTGAAACAACTATAGATGAGGTGCACCTAGCACCAAACACAAATGTAATTAACTTAAGTGCACCAAACACAGATAAAGCACAAATAGAGACAGTTGCCATAGATAGTGGTAAACGGGAAGCGGATTCAAAAATAGAACTTGTGAAGAAGAAAGATAAAGTTAAGATCAAAGATAATATAGATAATGTAGTTGGGGATGTATTTGTAGTGAATAAAATGAAAACTGTTAAAACTTATAAAAGAAACGTAGCCACAGTGAAGAAAAATATGGATATTGAAATACAAGCATACAGTGATAAAGTTAATAACGAATTAGACAAAAACGAATCAAATATAAATCTAGATACACCAATGGATAAGGCAAATATAAACGTAAGTTACAAAAGTATAAACACTGTTTATGCAGGTATAATCAATGATGATATAGGCGACTCGGACATAGACGACATCAATGAAGTAAACGCACATATGGACATTATTGACGTTGATAGTATACTAAAGAAAGCTGTGAAAAAGACTAAAACGTGTAAAAGAAAAATTGGGATTACAGTCAAGAAGAATATAGAGAATTCTAAAGATAATTCTGATAATGCAGATGAAAAACCTGTGAAACAAGTGAAAAAGCGACGGAGGAAGGAAAGGAAGATCAAGTATAGGAACCCGGAAAATGACTATTTGCCCGAGTTTGATTTTGCCAAGTTTGAGAGCGATTATGGCGTGAAAATTGTTACTTTGAGTAAGCGAGAGCAACTGGAAGAGATCGCCGCGCGTAAGCAGTCCGCAAATTACACCACGGCGCAGTTCCCGTGCGATGACTGCGGGAAAGGCTTCGACATGGAGCCAGCATACAACAACCACCGCCGGCGGCACAGCCCTCTGAATACGGATTGTATTCGCAGAATAGATCGCTCCCACCGCCTTCTCAACCAGACTTTATCTGTAGTCCACACCATTGACTGTGTTGAACACCCGCATACAGAAGATATAAAAAAAGAACCAATTGACATAAATAACACAGATGAACCAACCATAGAAACAGCTATCAAAAGTGAGGTAAATATGGAAATAGATGAAGTAAACTTAAGTGAAACAACCATAGATGAAGTTAACTTAATTGAAACAACCGATGAAGGGCACCTAGCACCAAATACAAATGTTATTAACTTAGGTGCATCAAACACAGATAAAGCACATATAGAGACAGTTGCCATAGATAGTGGTAAACGGAAAGTAGATTCAAAAATAGAACTTGTGAAGAAGAAAGATAAAGGTAATATTGATAATGTAGTTGTAGTGAATAAAATTAAAACTGTTAAAACTTATAAAAGAAACATAGCCACAGTGAAGAAAAAGATGGATATAGAAATACAAGCGCACAGTGCTAAAGTTAATGACGAATTAGACAAAACCGAATCAAACATAGATCTAGATACAGCAATGGATAAGGCAAATATAAACGTAAGTTACAAAAGTATAAACACTGCATATGCAGGTATAATCAATGATGACATAGGCGACTCAGACATAGACGACATCAATGAAGTAAAAGCACATATGGACATAGTTGATATTGATAGTATACTAAAGAAAGCTGTGAAAAAGACTAACCCGTGTAAAAGAAAAATTGGGATTACAGTCAAGAAGAATATAGAGAATTCTAAAGATAATTCTGATAATGCAGATGAAAAACCAGTGAAACAAGTGAAAAAGCGACGGAGGAAGGAAAGGAAGACCAAGTATAGGAACCCGGAAAATGACTATTTGCCCGAGTTTGATTTTGCCAAGTTTGAGAGCGACTATGGCGTGAAAATTGTTACTTTGAGTAAGCAACAGCAACTGGACGAGATCGCCGCGCGCAAGCAGTCCGCAAATTACACCACGGCGCAGTTCCCCTGCGAGGACTGCGGGAAGGCCTTCGACATGGAGCCAGCATACAACAACCACCGCCGGCGGCACAGCCCTAGCGCAGGCTCGCACGCGTGCGAGATATGTCTCGTGCGGTTCAAGTTGGCGTGCCTGCGCCACCGCCACCAGGACCTGCACAAGCTCAAGTTCGTCTGCGAGTGCGGGTTCGTGTCCCGGGACAGGTGGGCAGCGAAGTTGCACCACGAAATGCACAACGGCAGGCTGTTCGTTTGCAAGCACTGCAGGaaggtattcagCAAGCGGACCTCCTGCCTGTCGCACGTGCGTCTGTCGCACCCCGCGCTGAATGTCGCATGCGGCGCGTGCGGCGAAACGTTCGTCAGCGAACAGGGGCTCAAGATGCACGCGTCGATGATGCATTCCGAGATCATGAAACCGCAGTTCAAATGCCCAACATGTTCAGCGAGCTTCGTCAGTGTGGACGCGCTGAACAGACACACAGACAGGGGCGACCACGCGGGCTGTCCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGAGGCGCTACAGGCGCACGTGGGAGAGAGGCATCCGAGCGAGCCGCATCGGTGTGAGGAGTGTCGTGAAACATTCTCGAGCGGCGCGGCGTTCGAGACGCACTTCCGGCGGAAGCACCTCAACGAGCGCTACTCGCCCGCCGCCGCCACCGCCACCGCGGGCCGCGCCGCGCGCAGGAAGCCCGTGCGGTCCGGCCCGCGGCGAGTGCCACCGCGCGGCCAGTTCGTGTGCGAGCAGTGCGGACACATAGCGCCGGTATACTCTATGATAAACTTCATGAATCATGATATTTGCCCCATAGTCATAGTCATAGTCATGATAGCATTTATTGTCTTACCTCCTTAA
Protein Sequence: MDIIRTQSSKEDLLCCRACLDTDCKLLNIQEYKLYEAFSRISGTFVLKDQFPQYLCTHCRTLLLKCMSFKDMCLRTEQLLERELLKGELNTDCIRRIDCSHRLLNLTLSVVHTFDCVEDPHTEDIKKEPIDITNTDEPTIETTIKSEVNMEIDEVNLSETTIDEVNLNETTIDEVYLSEPTIDELNLSEIIVDEVNLSETTIDEVNLSETTIDEVNLSETTIDEVNLNETTIDEVYLSETTIDELNLSEITVDEVNLSETTIDEVNLSETTIDKVHLAPNTNLINLGAPNTGKAQIETVAIDSGKQKADSKIELVKRKDKAKINIDNVVGDVFVVNKMKTVKTYKRNIATVKKKMDIEIQAYSDKVNEKLDKNESNIDLDTDMSKANINVSYKSINTAYASIIHDDIGDSDIDDINEVKAHMYIVDVDNILKKAVKKTKKCKRNIGITVKKNIENSKEAVKKTKKCKRNIGITVKKNIENSKEAVKKTKKCKRNIGITVKKNIENSKDNSDKADEKPVKQVKKRRRKERKIKYRNPENDYLPEFDFAKFESDYGVKIVTLSKQEQLEEIAARKQSTNYTTAQFPCEDCGKGFDMEPAYNNHRRRHSPSAGSHACEICLVRFKLACLRHRHQDLHKLKFVCECGFVSRARYLDMDVFCRWTAKLHHEMHKGRRFFCKHCGKGFSKRTSYLTHVRLSHPALNVACGACGETFVSEQGLKMHASLMHSEIMKPQQFKCPTCAASFVSSDALNRHTDSGEHAGSACEQCGESCASEEALQAHVGERHPSDSRRCEECRATFSSGAAFDTHFRRKHLNERYSPAGRAARKSPARPGPRRGPSSGQFVCEQCGHILPVYSRINFMTATQRALLARRPRRSQEPRAARPAASAVERPSAALLRYHQNGHLAVKPFPCAECPKTFATKAARNSHARSHKGEKPHKCSVCSLSFTEKANLKRHHNVVHLGVHANASCHFCARVFTAKSNLRLHISSVHNGQPWPARVRRRKVSKDHFPQYMCTHCRTLLLKCTSFKDMCLRTEQVLERELLKGELNTDCIRRIDCSHRLLNLTLSVVHTFDCVEDPHTEHIKKEPIDINNTDEPTIETAIKSEVNMEIDEVNLSETTIETAIKCEVNMEIDEVHLSETTIDEVHLAPNTNVINLSAPNTDKAQIETVAIDSGKREADSKIELVKKKDKVKIKDNIDNVVGDVFVVNKMKTVKTYKRNVATVKKNMDIEIQAYSDKVNNELDKNESNINLDTPMDKANINVSYKSINTVYAGIINDDIGDSDIDDINEVNAHMDIIDVDSILKKAVKKTKTCKRKIGITVKKNIENSKDNSDNADEKPVKQVKKRRRKERKIKYRNPENDYLPEFDFAKFESDYGVKIVTLSKREQLEEIAARKQSANYTTAQFPCDDCGKGFDMEPAYNNHRRRHSPLNTDCIRRIDRSHRLLNQTLSVVHTIDCVEHPHTEDIKKEPIDINNTDEPTIETAIKSEVNMEIDEVNLSETTIDEVNLIETTDEGHLAPNTNVINLGASNTDKAHIETVAIDSGKRKVDSKIELVKKKDKGNIDNVVVVNKIKTVKTYKRNIATVKKKMDIEIQAHSAKVNDELDKTESNIDLDTAMDKANINVSYKSINTAYAGIINDDIGDSDIDDINEVKAHMDIVDIDSILKKAVKKTNPCKRKIGITVKKNIENSKDNSDNADEKPVKQVKKRRRKERKTKYRNPENDYLPEFDFAKFESDYGVKIVTLSKQQQLDEIAARKQSANYTTAQFPCEDCGKAFDMEPAYNNHRRRHSPSAGSHACEICLVRFKLACLRHRHQDLHKLKFVCECGFVSRDRWAAKLHHEMHNGRLFVCKHCRKVFSKRTSCLSHVRLSHPALNVACGACGETFVSEQGLKMHASMMHSEIMKPQFKCPTCSASFVSVDALNRHTDRGDHAGCPCEQCGESCASEEALQAHVGERHPSEPHRCEECRETFSSGAAFETHFRRKHLNERYSPAAATATAGRAARRKPVRSGPRRVPPRGQFVCEQCGHIAPVYSMINFMNHDICPIVIVIVMIAFIVLPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -