Eram028444.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388225.1:3585610-3608922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00035 0.028 15.8 0.3 2 23 405 427 404 427 0.97 2 11 0.0073 0.59 11.6 2.9 2 23 435 457 435 457 0.95 3 11 0.0015 0.12 13.8 4.7 2 23 489 511 488 511 0.97 4 11 0.00017 0.014 16.7 0.8 2 23 520 542 520 542 0.94 5 11 0.038 3 9.4 1.5 3 23 552 573 550 573 0.93 6 11 0.094 7.6 8.1 0.1 3 23 584 605 582 605 0.91 7 11 0.0081 0.65 11.5 0.3 1 23 610 633 610 633 0.96 8 11 0.0031 0.25 12.8 1.0 3 23 668 688 667 688 0.97 9 11 4.3e-05 0.0035 18.7 0.1 1 23 694 717 694 717 0.95 10 11 0.0023 0.19 13.2 0.9 1 23 723 745 723 745 0.97 11 11 3.2e-05 0.0026 19.1 1.2 1 23 751 774 751 774 0.95
Sequence Information
- Coding Sequence
- ATGGATTCAGTGAAGTTGGAACTGGAACTCGAGGGTTTGGTCGCGTGTCGTATATGTCTGGCTTGGGAAGGCAAACTCTTCAACATTAGGGAATGGGGACTAGATCAGGTGTACGTCGATATAACTGGCGCGACTCTGTCAGCATGGGACGGGTTCCCGCAGCACCTGTGCGCGTGGTGCCGCGCGCAGCTCGTGAAGGCGCACGCGCTGCGCGCGCGCAGCCGCCGCGCCGACGCGCTGCTCAAGCAGGCGCTCATGCACCAACACTTTCACCTGTGCGCGTGGTGCCGCGCGCAGCTCGTGAAGGCGCACGCGCTGCGCGCGCGCAGCCGCCGCGCCGACGCGCTGCTCAAGCAGGCGCTCATGCACCAACACTTTCACCTGTGCGCGTGGTGCCGCGCGCAGCTCGTGAAGGCGCACGCGCTGCGCGCGCGCAGCCGCCGCGCCGACGCGCTGCTCAAGCAGGCGCTCATGCACCAACACTTTCACCTGTACGCGTGGTGCCGCGCGCAGCTCGTGAAGGCGCACGCGCTGCGCGCGCGCAGCCGCCGCGCCGACGCGCTGCTCAAGCAGGCGCTCGTGCACCAACACTTTATCACAAACAGCTTTATCCGTACAATCGATCGCCCAGCACACAAACTGCCATATAATTTCTCCAACCACACCCCTAAAGCAATCATAGATGTTATATTTGACGAAAATACTCATAAAAAGGCAGCAAACAACGACGATGACGTAAAAGACGAGCGCGACATGATTATAGACGACCATGACATGGACGATGGTTTATTTATAGATGATGCAGATGACTTGAAACCCCTTATTAACTTCGCTGATGTCTCTCTAGTTAAAGATGACGACTTAACAGAAGTTAGTTTAGATAAGAGCAAAATCATTGTAGAAGTAGGCATAAGACCTAAATCTAAAACTGCCAAAAGACCGGCTAAAAGAAAAAAGGTAGAAATAGACGAAGCTCCGAAAAGGAAAAGAACGCAAAAGAAGGAACTAACAGAAGAAAAGAAAGAGGCTTCAGTTAAATTCGTAGTAAAAAAGAAAGAGAAGCGATTAAAGAAGAGTAAGATTAAAAGAGAAGAGGATTATAAAGAGTTTGAGAAGAAATATGACTTCCAAGTGAAATGTTTGACGGAGGAGGAAATGGTTGAGGATATGGAGAGGAGAAAGCTTTCAGACAAGGCTATTAAGGGTGTAGTGAAGTGTCAGTTGTGTTATAAGGGGTTTATGAATGCTACCACTCTGGAAAATCATATGAAGATCGCACATGACCCATCTGTGGGCTCCAACGAGTGTCACCTCTGTCACCTGCGTTACCGTTTCGCCGTGAACCTCCGACAGCACCTACAGAACGCGCACCAGCTCATGTTCAAGTGCAGACGGTGCGAGGAGATCGTGTGGGGCGACTCGCACGCAGTTCTACATGCTGGCATCCACGCCGGGACCACACTCAAGTGCCGACACTGCGACAAGCAATTCGTTAAGAAAACGACGCGAACGACACACATGCGTATGGCGCACCCGGTGGAGAACGCGGCCGGCGGCACCTGCGAGGTCTGCGGGGAGACCTTCACGAGTCGTCGGGGGCTGCGGAGCCATAAGGCGCGCACACACAATAAGCCGACGGTGCCCGGTCTGTTCTGCCGCAAGTGTCGCGTGCAGTTCGACAGTAAGGAGGCCCTCACGCGCCACAAGCAACTGCAGCACGGCCAGCGGTGCAACAACGACCAGAGTGCGTGTGAGCAGTGCGGCGCGCTATATCCAACCGAGGACGAGTTGATACGTCACAAGCATGAAGCTCACGGCGTCCAACTCTTCACCTGTGATGCGTGTAACAAATCCTTCCTATCAAAAGTGTCGCTCTCAGTGCACATTGACCGCGTGCATCTCAACATCAAGCCCGTGCGGCCGAACCGTCCAAAGCCGGCTGGGGAGCGCTCGCGGCCCGGCAAGCCCAAGCCGAAGCAGAAGTTCAAGATGGACAACATGTGTGAGATCTGCGGGAAGGCTTATTCGTGCCTAGCGCTGTTGAAGACACACCAGATGCGTCACACGGGCGACCGGCCGTTCAAGTGCACGGAGTGCCCGAAGGGGTTCGTCACCGCCACGCTGCTCCGGGAGCACAGAGACATCGTGCATGCGCGGCTCCGCAAGTACCGCTGTCCGTTGTGTCCAAAGACTTTCCTGCACCAGTCTTCGGTCTACGTCCATCGAGCCATCCACACGGGGGAGAAAGCGTACGAATGCAGTTTCTGCGGGAAAGCCTTCACCCAAGCCGGGACCCTGCACACACACGTCAAGTTCGTGCATATGAAGGTGAAACCGCCGCCGCGCAAACGGAACAAGCTCATGGATCCGTGA
- Protein Sequence
- MDSVKLELELEGLVACRICLAWEGKLFNIREWGLDQVYVDITGATLSAWDGFPQHLCAWCRAQLVKAHALRARSRRADALLKQALMHQHFHLCAWCRAQLVKAHALRARSRRADALLKQALMHQHFHLCAWCRAQLVKAHALRARSRRADALLKQALMHQHFHLYAWCRAQLVKAHALRARSRRADALLKQALVHQHFITNSFIRTIDRPAHKLPYNFSNHTPKAIIDVIFDENTHKKAANNDDDVKDERDMIIDDHDMDDGLFIDDADDLKPLINFADVSLVKDDDLTEVSLDKSKIIVEVGIRPKSKTAKRPAKRKKVEIDEAPKRKRTQKKELTEEKKEASVKFVVKKKEKRLKKSKIKREEDYKEFEKKYDFQVKCLTEEEMVEDMERRKLSDKAIKGVVKCQLCYKGFMNATTLENHMKIAHDPSVGSNECHLCHLRYRFAVNLRQHLQNAHQLMFKCRRCEEIVWGDSHAVLHAGIHAGTTLKCRHCDKQFVKKTTRTTHMRMAHPVENAAGGTCEVCGETFTSRRGLRSHKARTHNKPTVPGLFCRKCRVQFDSKEALTRHKQLQHGQRCNNDQSACEQCGALYPTEDELIRHKHEAHGVQLFTCDACNKSFLSKVSLSVHIDRVHLNIKPVRPNRPKPAGERSRPGKPKPKQKFKMDNMCEICGKAYSCLALLKTHQMRHTGDRPFKCTECPKGFVTATLLREHRDIVHARLRKYRCPLCPKTFLHQSSVYVHRAIHTGEKAYECSFCGKAFTQAGTLHTHVKFVHMKVKPPPRKRNKLMDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -