Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388200.1:49937859-49939484[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0012 0.094 14.1 0.4 1 19 102 120 102 122 0.97

2 9 0.047 3.8 9.1 7.8 1 23 143 165 143 165 0.98

3 9 5.5e-05 0.0044 18.3 2.3 5 23 174 192 171 192 0.96

4 9 1.1e-06 8.7e-05 23.7 2.7 1 23 198 220 198 220 0.98

5 9 0.00012 0.0096 17.2 3.9 1 23 225 247 225 247 0.97

6 9 9.4e-06 0.00076 20.7 0.4 1 23 253 275 253 275 0.98

7 9 0.00011 0.0093 17.3 1.9 2 23 282 303 281 303 0.97

8 9 4e-05 0.0032 18.7 0.7 1 23 309 331 309 331 0.99

9 9 0.00092 0.075 14.5 2.5 1 23 337 360 337 361 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0012	0.094	14.1	0.4	1	19	102	120	102	122	0.97
2	9	0.047	3.8	9.1	7.8	1	23	143	165	143	165	0.98
3	9	5.5e-05	0.0044	18.3	2.3	5	23	174	192	171	192	0.96
4	9	1.1e-06	8.7e-05	23.7	2.7	1	23	198	220	198	220	0.98
5	9	0.00012	0.0096	17.2	3.9	1	23	225	247	225	247	0.97
6	9	9.4e-06	0.00076	20.7	0.4	1	23	253	275	253	275	0.98
7	9	0.00011	0.0093	17.3	1.9	2	23	282	303	281	303	0.97
8	9	4e-05	0.0032	18.7	0.7	1	23	309	331	309	331	0.99
9	9	0.00092	0.075	14.5	2.5	1	23	337	360	337	361	0.92

Sequence Information

Coding Sequence: ATGATGTGCAATAATTGTATAGAGGAATTAAATATAGCCAATAACTTTAGATCAAAATGTTTACAGTTTGAAGAGAATCATGTCAATAGTAAGGATACCAAAGTAGAAGCTGAATGTGGTGATACAGAGAGAAATGTAAAGAAAATTGACAATCATGAAGATGTTCCTGTCTGCATAATGATGGATAATTATGATCATGATCATGATATTTTCTCAGATGAATTAGTGAAGTTTAAGTCAGAAACTAATGAAATAAATAGTCAACTATTGAATGACAAACCTATCACAGAAACACAAAATGAGTTTCAATGCGATATATGTCATAAAGTTTTGAGATCGAAGTTATCACTAGCTAAGCACAGTGTGTGTATGCATCAGAAGCGTAAGCATGTCGGTAGAGTCACTGGCTATGGGGCTTCTCGACGGTACCACTGCACTAAGTGTACTTACTCCACTCCTCACAGCCAAACATTAGTCAACCATATGCACAGGCATGATGGTGTCAGACCACACCAATGTGAATGTGGGAAAAGCTTCACACAGACCTCAAGTCTAGCAGCGCATCGCAAAACACACAGCCACACAACATTCTACACATGCTCGGTCTGCGGAAAACAATTTAAACATGCCTTCTCTTTGAAAAAGCACTTACTTGTTCATGAGAAAGGGAGCTTCAATTGCGAAGTTTGCCAGAAAACCCTTAAATCGAAGAAGAGCCTCCAGGACCACATGCATCGTCATTACAACATTCGTAACTACAACTGCGAAGACTGTGGAGATACATTTGTGACCTCATCTGAGCTACAGAGTCATCGGCTCAAACATAGCATAGACAAGAAAGTAGAATGCCACTTGTGTGGGTACAGGACTAACACCAAAAAGAGTTTGATAGTCCATTTGAAGAGGCACGCCGGCCACAAAGCGTTCAAGTGCTCATTGTGCTCGCAGGCGTTCTACACGGCGGGCGAGGTGCGGCGGCACCGGCGCGTGCACTCGCGCGACAAGCCCTACCCGTGCCCGGCGTGCGCGCAGCGCTTCACGCACAGCTCCTCGCTCAACAAGCACGTGTTCAATCTGCACCACATACATTACAAGTGGGCAGACTTCAGGGTGAAAAAGAAATAA
Protein Sequence: MMCNNCIEELNIANNFRSKCLQFEENHVNSKDTKVEAECGDTERNVKKIDNHEDVPVCIMMDNYDHDHDIFSDELVKFKSETNEINSQLLNDKPITETQNEFQCDICHKVLRSKLSLAKHSVCMHQKRKHVGRVTGYGASRRYHCTKCTYSTPHSQTLVNHMHRHDGVRPHQCECGKSFTQTSSLAAHRKTHSHTTFYTCSVCGKQFKHAFSLKKHLLVHEKGSFNCEVCQKTLKSKKSLQDHMHRHYNIRNYNCEDCGDTFVTSSELQSHRLKHSIDKKVECHLCGYRTNTKKSLIVHLKRHAGHKAFKCSLCSQAFYTAGEVRRHRRVHSRDKPYPCPACAQRFTHSSSLNKHVFNLHHIHYKWADFRVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01072846;
90% Identity: iTF_00656449;
80% Identity: -