Eram017393.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388222.1:5344432-5347227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.19 15 7.2 1.0 3 23 133 153 132 154 0.94 2 14 0.0024 0.19 13.2 0.9 1 23 159 182 159 182 0.93 3 14 0.025 2 9.9 1.0 1 23 187 210 187 210 0.89 4 14 0.0027 0.22 13.0 0.3 1 23 215 238 215 238 0.90 5 14 0.0015 0.12 13.8 0.7 2 23 246 268 245 268 0.96 6 14 0.002 0.16 13.4 1.1 1 23 274 296 274 296 0.96 7 14 0.0043 0.35 12.3 0.1 1 23 348 371 348 371 0.95 8 14 0.004 0.33 12.4 1.5 2 23 447 468 446 469 0.95 9 14 0.00081 0.065 14.6 1.8 1 23 474 497 474 497 0.91 10 14 0.66 53 5.5 0.2 1 22 502 523 502 525 0.80 11 14 0.0024 0.2 13.1 1.1 2 23 531 553 530 553 0.96 12 14 0.0016 0.13 13.7 0.4 2 23 561 583 560 583 0.95 13 14 7.5e-05 0.0061 17.9 0.6 2 23 590 611 589 611 0.96 14 14 5.5e-06 0.00045 21.4 1.3 1 23 617 639 617 639 0.99
Sequence Information
- Coding Sequence
- ATGAAACTGGAATATCGAGGGAAACTAGAAAAGAAACGAAGAAATATCGAATCGGTCTTATTGTACAGCAATGTTGTCCCCTTTATATGGCATCGCGGGAAATACAAATGCTTCCTCTGCAAGGATATGGACAGGAATCCCAATACGATTCTCAACCATTATCAGACCCATGACTGCGTAAATCTGCCTGTAGCCGTCAGCAGATATACTCAAAAGCGAGGAAACGCCGAGGCCGCGATAAAAGTGGAAATCACAGATTTGCATTGCAAACTATGCTCTGAAGATATGCAAGATTTGAACGAGCTCATACAACATCTGATGGGCAATCACGAGGTTGAATATGATCTTGATATACCAAACTGTTTCCTACCATTCTTGTTGAGAGGCTCACCAATCTGCGGGACTTGCAACATGGAATTCGATCTATTCGAATATCTGCTTAGACACGCGAACAAGCATCATTTACAACACAGTTTCATATGCGATATTTGTGGGAAAAGTTTTTTCTCTGAACGATATTACGGAATGCATCTAAAGGACTTCCATCGAGAAGGCGGTTACAAGTGCGATTACTGTGATTTAAAATTCTCGTCTATGCCCAAGAAATCTGCACACGAACAGAGCTCGCATCTAGTGAAACAATTCAAGTGCTCGATCTGTGATAAAACCCTAAAGACAGCTTACTTAAAAAACGTACATTTGGTCGAAGTTCACGGACTCGAAGATAAGAAAAAGAAATGCCCTCATTGCCCTAAAGTCTTTCCCCAGGCTAACATCATGGTTCGACATCTAAAGCGGGTACATTTGAAGCAGAAAGAACATATATGTCAGGTGTGCGGAGAGAGATTCTTCGAGAGCTACCAAATGAAGATACACTTGAAGGCGCATTCGGGAGACAAGAATTACAGCTATGACAAACCGAAGGATAAGAAGCACAAGAAAACCGCGGGGCGTCGGTACAAACTCTCCTTAATTCGGAGAAACGTCCACATCCTTCTAGAATACGGGAACGTTATGCCCTTCATGTGGTCGCGTTCCACCTATCTCTGCTTCTATTGCAAACAGCCCGCCAAAGATCCCGACGATTTGAGGGAGCACATAGCGACTATGCACCAGTTCCTCGATTTGGACCAAATCCTAAGCTTGAGGATATCAAATACCTGGGACAGTGAGGTGCCCGTCAAGCTGGATGTTAAAGAAATTTCTTGCAGACTGTGTATTACCCCTATATCTAACCTACTCGAGCTAATCCACCATTTAAACAACGTCCATGAAGCCGATTACGATACTTCTATAAAAGACTGCCTCTTCTCCTTTGAGCTCGGCAAGGAAAAAGTGACGTGTTCTGTCTGTGACATGCAATTCAACTATTTCGAGTACCTTCTCCGTCACGCAAATAAGCACCATATCAACCACGAATTCGTCTGCAACGTGTGTGGAAAATCATTCCATCGACAGAACGTTCTCGTGACGCATTTCAACGATTACCACAGAGAAGGTGGCTATCCTTGTGATATCTGTGGTCTTATGAGCTCCACAGCCGCGCGGCGGTACAACCATAAAATTAACTTCCATTTGATCGACCATTTGAAGTGCCCTTACTGTCCTGAAGTTTGTAAAAGTAAATATTATAAAAACCTCCACTTGGCCACTGTTCATGGAGTTGAGGAATGCAGAAGTGAATGCCCGCATTGTAACAAAATGTTTCCTCAGAAAGGCATAATGCTCGCGCATGTGCGAAGGGTCCACTATAAGGAGAGAAATGTTGAGTGTTCCGTTTGTGGGTACAAGTTCTTCAATAAGGCGCACTTGGACGCGCATATGGTGAAGCATACGGGCGGACAGATGTACACATGTGATGTTTGCGGCAAGTCCTATTTGAGGAAGAGCACATTGAAGGCACATCTTAAGAGACACATCAACGGTCGGGTGAAAGTTTAA
- Protein Sequence
- MKLEYRGKLEKKRRNIESVLLYSNVVPFIWHRGKYKCFLCKDMDRNPNTILNHYQTHDCVNLPVAVSRYTQKRGNAEAAIKVEITDLHCKLCSEDMQDLNELIQHLMGNHEVEYDLDIPNCFLPFLLRGSPICGTCNMEFDLFEYLLRHANKHHLQHSFICDICGKSFFSERYYGMHLKDFHREGGYKCDYCDLKFSSMPKKSAHEQSSHLVKQFKCSICDKTLKTAYLKNVHLVEVHGLEDKKKKCPHCPKVFPQANIMVRHLKRVHLKQKEHICQVCGERFFESYQMKIHLKAHSGDKNYSYDKPKDKKHKKTAGRRYKLSLIRRNVHILLEYGNVMPFMWSRSTYLCFYCKQPAKDPDDLREHIATMHQFLDLDQILSLRISNTWDSEVPVKLDVKEISCRLCITPISNLLELIHHLNNVHEADYDTSIKDCLFSFELGKEKVTCSVCDMQFNYFEYLLRHANKHHINHEFVCNVCGKSFHRQNVLVTHFNDYHREGGYPCDICGLMSSTAARRYNHKINFHLIDHLKCPYCPEVCKSKYYKNLHLATVHGVEECRSECPHCNKMFPQKGIMLAHVRRVHYKERNVECSVCGYKFFNKAHLDAHMVKHTGGQMYTCDVCGKSYLRKSTLKAHLKRHINGRVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680936;
- 90% Identity
- -
- 80% Identity
- -