Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388222.1:5396618-5404979[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00099 0.081 14.3 0.0 1 23 228 251 228 251 0.93

2 10 0.51 41 5.8 0.2 2 23 277 299 276 299 0.92

3 10 0.012 1 10.9 1.6 1 23 322 344 322 344 0.97

4 10 2.4e-05 0.0019 19.4 3.3 1 23 348 370 348 370 0.98

5 10 0.0078 0.63 11.5 9.8 1 23 375 398 375 398 0.97

6 10 0.011 0.9 11.1 0.6 3 23 407 428 405 428 0.93

7 10 8.6e-05 0.0069 17.7 1.2 1 23 434 457 434 457 0.98

8 10 2.7e-06 0.00022 22.4 1.2 1 23 463 485 463 485 0.98

9 10 3.2e-06 0.00026 22.2 5.2 1 23 491 513 491 513 0.98

10 10 0.00054 0.043 15.2 2.3 1 23 519 542 519 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00099	0.081	14.3	0.0	1	23	228	251	228	251	0.93
2	10	0.51	41	5.8	0.2	2	23	277	299	276	299	0.92
3	10	0.012	1	10.9	1.6	1	23	322	344	322	344	0.97
4	10	2.4e-05	0.0019	19.4	3.3	1	23	348	370	348	370	0.98
5	10	0.0078	0.63	11.5	9.8	1	23	375	398	375	398	0.97
6	10	0.011	0.9	11.1	0.6	3	23	407	428	405	428	0.93
7	10	8.6e-05	0.0069	17.7	1.2	1	23	434	457	434	457	0.98
8	10	2.7e-06	0.00022	22.4	1.2	1	23	463	485	463	485	0.98
9	10	3.2e-06	0.00026	22.2	5.2	1	23	491	513	491	513	0.98
10	10	0.00054	0.043	15.2	2.3	1	23	519	542	519	542	0.97

Sequence Information

Coding Sequence: ATGGATATATCCAGCGTTTGCCGATGTTGCATGTCCCCAGGTCTAGTGAAAGACTTGTACACTAGCTATGTGTGGTTGGACAGAAACGAAATATACTCCGATATGCTGCAAGAATGTTATAATATTGTCCTCACCAGGTCGGAGAACGGTAGCATCTGCGAGAGCTGCATCAAGCAGCTCCGGGGAGCACTCCGGTTCAAAGAGCAGGTGCACCTCTCCGAGAAAGAGTTCCTTAAGCAATTGCAATCCTATGCAGAGCATGATGGGAAGCCGTTCGAGGTGAAGCAGGAGCCGAAACAAGAGAGTGACGGTGACGACTCGGATGACTACTTCCTGGCTGACGCAGTGAGGCAAGTCCCAGTGCAAGTGATCAAGCCGGAGCGGACGGAGGCGAGGCGGAAGAAGCCGCTCAAAAAGGACGGCGAGCGCGCGCGCAAGATACGGACACTAGTCAACAGGCTCGCCACTTCCATTAACTCCTGTGAACTCCCCAACCTAACCACCCTAAAACCGAAACAAATAAACCGCATAGTGAAATCGGATCGCAAACGAAACGACCCACTCGACGCTATCAGCTGGACCTCACGCGTCAAAAACGACAAGAAAAAACACAGGGACAACCTCCAGACCatactgaagtattccaacgctatgccattcaaaaacaaatcgttgttagggttcctgtgcggatactgcgaggaaccattccctgatccagcagatttaaggatacacaccgaaaaggaccataagaaagaacgcctagagttcaaatcttcattcgacatgactgaatacaatgtgaagttacatgtaggcgatctgaattgtaccctgtgcgacgaaaaactggagaatttaaacgtgttgaagacgcatttagtgaaagtacataataagaccatttacagcgacatcaaagatcatatactacagtttaaactcaagaaaggtgacgtgtacgactgcgcgctatgtacgtcgacgtatgagacgtttaaaatgttaaagcagcatatgaataagcattacgctaactatacttgcaagaaatgtgaaacttcgttcgccacgaagcgatctttgaattcgcaccggaccacgcatcaggaaggcagtcacaaatgccagcattgtgataaagtgttctcaagcaaatctaaacagcattaccatgtgaaaaccaagcatttaggctctagaagcatctccaactgcccgttctgtaatgagccgttccggagttactaccaacggaaccaacatttagtgaaagttcacaactccgaagcgcagtacaaatgcaatgtgtgcaataaaggttatatcttaaagtccttactgatgtatcatataaagaagacccatttgatggaaaggaactatcaatgcacggagtgcggttataagtttttcagtaaaaaagctctgaacgcacatatggtgaagcatactggcgagagaaagtattcctgtgaagtgtgccataagtgttacgccagaaagtatacgctcagagagcatatgaggattcacaataatgataggcggtttaagtgcgatgtgtgtgcgatgacgtttgtgcagaaatgcagtttgaagagtcatctgttgtcaaatcatggGATCAGTATGGCAGCCTGCGATATCGCGTCTGCCGATAGAGACAGTATCAGAGGACAGTGA
Protein Sequence: MDISSVCRCCMSPGLVKDLYTSYVWLDRNEIYSDMLQECYNIVLTRSENGSICESCIKQLRGALRFKEQVHLSEKEFLKQLQSYAEHDGKPFEVKQEPKQESDGDDSDDYFLADAVRQVPVQVIKPERTEARRKKPLKKDGERARKIRTLVNRLATSINSCELPNLTTLKPKQINRIVKSDRKRNDPLDAISWTSRVKNDKKKHRDNLQTILKYSNAMPFKNKSLLGFLCGYCEEPFPDPADLRIHTEKDHKKERLEFKSSFDMTEYNVKLHVGDLNCTLCDEKLENLNVLKTHLVKVHNKTIYSDIKDHILQFKLKKGDVYDCALCTSTYETFKMLKQHMNKHYANYTCKKCETSFATKRSLNSHRTTHQEGSHKCQHCDKVFSSKSKQHYHVKTKHLGSRSISNCPFCNEPFRSYYQRNQHLVKVHNSEAQYKCNVCNKGYILKSLLMYHIKKTHLMERNYQCTECGYKFFSKKALNAHMVKHTGERKYSCEVCHKCYARKYTLREHMRIHNNDRRFKCDVCAMTFVQKCSLKSHLLSNHGISMAACDIASADRDSIRGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412791;
90% Identity: iTF_00658745;
80% Identity: -