Eram029052.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- zfh1
- Assembly
- GCA_947578815.1
- Location
- OX388225.1:13467398-13482101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00047 0.038 15.4 3.2 1 23 215 238 215 238 0.96 2 11 0.03 2.5 9.7 0.1 2 19 246 263 245 263 0.97 3 11 0.023 1.9 10.1 0.0 2 23 272 293 271 293 0.96 4 11 0.0069 0.56 11.7 1.1 1 23 297 320 297 320 0.95 5 11 0.0097 0.79 11.2 2.0 1 23 323 345 323 346 0.95 6 11 0.00066 0.054 14.9 0.1 2 23 350 372 349 372 0.95 7 11 0.0053 0.43 12.1 0.2 3 20 380 397 379 399 0.93 8 11 8.1e-07 6.6e-05 24.1 0.4 2 23 412 434 411 434 0.95 9 11 0.17 14 7.3 4.8 1 23 440 463 440 463 0.93 10 11 2.6e-05 0.0021 19.3 0.2 3 23 474 494 473 494 0.98 11 11 0.68 55 5.4 0.0 1 23 500 523 500 523 0.89
Sequence Information
- Coding Sequence
- ATGTACGGTGTAAAAAGGGAAACTGAAGAGGTTTTATGCCACGGATGCCTCAGTGCCGACCGGAGGCTTACTCCCCTGACGACTTATGAACTCTTCTTCACACTTTTAGGGCACACACACTCGCTGGAGGAATACAAATGCCTCAATATCTTGTTATGCTGGGAATGCCATGCATTGCTGAGGCGCACACAGTTATTCCGCGCCCGCTTGCACCGCGCGCAACTTGCGCTGACACTGGATCTCTCCCAACGGACTTCGACAGAAACCCTATCTACACTCAATTACAACCATAAGCAAGATTACGACTGCATAATAGAGGAAACCATAGAGTCAAAACCTGATGTAGACCAATTCGTAAACAGTCCGGAACTAGATATAAAAGAGGAATTTGACGCGGACCGTTGTGAAATTGATAATTTCGATTCCAATCATAAAGATATAGATAATTATGAAGCAGATAAAGAAATTGAACCTCCAACGAAAACGAAATATAAGAAAGACAGAGAGAAAAAACAGTTGCAGAAAATCGATTGTAGTATAGACTTAAGTAATCCCGATAAGTATTTTAGCAAGGTGTGTTTGAGCGAGAAGGAAGTAGATGGGATATTGGCGAGGGAAAGGGAGGAAGATTTCAGTCGGCCCCACAAATGTGACATGTGTGGGTTCCAGTTTGCGAGTAAAACTGAATTGTTCAGCCATCGGAAGAATATGCACAGACTGCGCGTCACCACAGGCAAATGCCCCGACTGCTCGTTCCCCTACCGGAGCCAGTGGGAGCTGGAGCTCCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGCTGTGCGGCGCGGCGGTGGCGCGGCCGCGCGACCGCCGCCGCCACCTGCGCGCGCACCGCCGGCGGTACCGCTGTCGAGACTGCGGGCTCGACTTCGATAACAAGCAGTTGTTCCTGTACCACGAGAAGCAGTTGCACTCGAAATACGTCTGCGACCACTGCGGGCACGTCGCTGCCGCCAAGAAGTCCTTGGAGAAGCATGTCGTCCGCCACCACCTCCCCAACAAGTGCTCTGACTGCGGCCTGCTGTTCCCGAGCTGGGAGCGGCTCCGGCGCCACGCGCGCGACGCGCACGCGCGCTCCGGCCCCGCCTACTGCGTTGAGTGTGACGTCACCTTCGCCACGCGCGCCAAGTACAAGCGGCACCTCAGCCAGGCGCAGAGGCATCGGCCTAGGAAGAAAATCAGCGTTCCTTGCCCGGAGTGCGGCAAGGTGTTCTCGCGGCGCAACTACATGAACAACCACATGAAGCTGTTCCATTCCAACCAGTCGCGCCATCACTGCCAGCTCTGTGATAAGTATTTTGTGACGGGGTTCTCGCTGCGCTCTCACAACAAGTATGTCCACGAGAAGATACCGATGCCCAAGACTAAGATATGCAGCGTGTGCGGCCGCGGGTTTGGGACAAATCGCGTGTTAGAGAACCACATGCGCACGCACACGGGCGAGCGGCCGTTCGCGTGCGCGCGCTGCGCGGCCGCCTTCGCGCAGCGCGTCGCGCTCGCGGCGCACGTCGCCGCCATACACAAGGACAAGTGA
- Protein Sequence
- MYGVKRETEEVLCHGCLSADRRLTPLTTYELFFTLLGHTHSLEEYKCLNILLCWECHALLRRTQLFRARLHRAQLALTLDLSQRTSTETLSTLNYNHKQDYDCIIEETIESKPDVDQFVNSPELDIKEEFDADRCEIDNFDSNHKDIDNYEADKEIEPPTKTKYKKDREKKQLQKIDCSIDLSNPDKYFSKVCLSEKEVDGILAREREEDFSRPHKCDMCGFQFASKTELFSHRKNMHRLRVTTGKCPDCSFPYRSQWELELHCWRSHAAWRCALCGAAVARPRDRRRHLRAHRRRYRCRDCGLDFDNKQLFLYHEKQLHSKYVCDHCGHVAAAKKSLEKHVVRHHLPNKCSDCGLLFPSWERLRRHARDAHARSGPAYCVECDVTFATRAKYKRHLSQAQRHRPRKKISVPCPECGKVFSRRNYMNNHMKLFHSNQSRHHCQLCDKYFVTGFSLRSHNKYVHEKIPMPKTKICSVCGRGFGTNRVLENHMRTHTGERPFACARCAAAFAQRVALAAHVAAIHKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00656443;
- 90% Identity
- iTF_00656443;
- 80% Identity
- -