Basic Information

Gene Symbol
-
Assembly
GCA_947578815.1
Location
OX388210.1:13910722-13915508[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 3.6e-06 0.00029 22.0 6.2 1 23 260 282 260 282 0.99
2 11 0.011 0.92 11.0 1.9 1 23 288 312 288 312 0.95
3 11 6.3e-05 0.0051 18.1 3.4 1 23 321 343 321 343 0.99
4 11 4.5e-05 0.0036 18.6 3.4 1 23 352 374 352 374 0.98
5 11 0.019 1.5 10.3 1.2 1 23 380 402 380 402 0.99
6 11 0.00025 0.021 16.2 0.4 1 23 408 431 408 431 0.97
7 11 0.044 3.6 9.2 1.7 2 23 437 456 436 456 0.96
8 11 5.5e-06 0.00045 21.4 3.3 1 23 462 484 462 484 0.98
9 11 2.4e-05 0.0019 19.4 1.2 1 23 490 512 490 512 0.98
10 11 1.3e-05 0.001 20.3 0.6 1 23 518 541 518 541 0.98
11 11 0.0063 0.51 11.8 0.9 1 19 547 565 547 567 0.97

Sequence Information

Coding Sequence
ATGGCTAATACAAATACAGAAAAGAAGAGAAATAAAGATGACAAGTTATCAACAGGTAAATACCCTAAGAAGACGATGAGGCTCGAGGAAGTGGAGGAACTGAAGTTCTTGACACCCGACGAAAGGATACAGGTTTTCATCGAAAATGGTCACTTGATTAAAGATAACTTATTTAATGATGTAGCGCTGAGAAAAGGAACTTTGCAGAAAGAAGCGCTAGTCCGTAAACCCAATAACCTCACAGCGAAAGAAGGTATACTCAAAAAGCGAAAAAAGCATATAAAATACTTGGATTCCATTTTAATGAGTGAACTTCTAATTGGACGACCAAATAAAGATGGGAACACAAAAGCTGGCCCAGACAACAACAATGATACAGACTTGAGCAACCAAAACAATGGTGACAGTACTAAAAATAAAACAAACAAAGGAAAAACGGCGAAGGAAAGTGAAACTACGAATAAAGGACAGAGTAATGATGAATTTATTGAAATTACTATTGACACAGGTGAGCCCATTGTTCCTACAGAACAAACAAACCCTAATGAGCCTAAGAAAGCTAAGAAACAAACACAGAAACGTAAATTAATCAACAAAAATAGTGAAGTGATAGAAATAACTATTGATACAGACAACCCTGTAGAAGTAGACCAAACAAATAGCATAGATGATCCTAAGAAAAACAAAAAAAATAAGGACTCAAAAATCCTCGCACAAAGACTGAAGCAAATGAAAAAAGTTAAACTCAGCAATGGGGTATCACTTTCACTCACTGATTACCAATGTGACCATTGCCAGATAAAGTTCTGCTCGAAATCTTCTTTGCAAAGACACATGCTGATGCATCTTGATCTAAAACCATACTCATGCGCACACTGTCCGAACAGGAAATTCAGGCAGCGAGGCAACTGGCGGGTTCACATGTCCCAGAACCACCCAGATGCCTTCGAGAAGATAAAGTATGAATGTAAAATTTGTAAGAAATCATTTGCCTTGCTTGAACACTTCAAGCTCCACCAAAAAATGCATGAAAATGAGAGACAGCTGCGGCGCTATACATGTGTCTTCTGCGAGAAAGTCTTCAAACAGAAGCGTCAACTAACGAAGCATGAGAAGTATCACATGGCCCCTGGGCGTTACAAATGTGCCATGTGCACCATGAGCTACGAATCCCGATTACTCTACTCCAACCATCTTAAAATGCATAACCAAGTTCAGAATTTCTCTTGCCAGCTCTGCGGTAAATCATACCTGAGATCTAGCTCGATCGCAAGACACATCCGAGTGAGTCATGGTGGTATGCGGATGCAGTGTCCGGTTTGCAACAAACTTTTAAAAGGCCATCTGACTGAGCACATGAGAACGCATGAGAACCAGCGCCCGCACAAATGTGATGTCTGCGGACAGAAGTTCACTCAGTCCACCCAACTAACTGTTCACAAACGCTCCCATACAGGTGCTAGACCGTACCCTTGCCGGATCTGTAAGCAGCCATTCACACACTCAAACGCTCTCATGCTCCACATAAGAAGACATACCGGAGAAAAACCATTTGAATGTGCTATGTGCCCGCAAACATTTTCCCAACTACCACATATGAAGGCACATATGCGAAGCATCCACAATAAATCGGAGTTCTATAAGTGTAGCAATTGTAATACCTTCTTTAAATTGAAGACATTGTTGGAGGCTCATTCAGAAGAATGTGGAGAAGCTGGGGGCGGGAAGAAGAAAGACAAAGACGAGACGCTTGTATCCCGAATGAGGTTCCTGCTAGCCCTCCTTTTCACCATGATCGCTTCTAAAGAAAAGCTCATCGTTTTAGGTTTCAACAAGCGCCGCATCGACGACATCCTGGTGGACTCAATCGAGGCGATGGGCCTATCGCCCTCCAAGGATGCCTCCCTGCCGACGCTCGCCCGGCTCCAGACCAACGCGCTCATGCTGCTGCGGGGCACCGTGCCCAAACACGAGATGGCGCTGTTCGAAAACGAGAACAAGTCCCCAGAGCAGATACTGGAACTGCTCACTGATGATCTGAACAAGTAG
Protein Sequence
MANTNTEKKRNKDDKLSTGKYPKKTMRLEEVEELKFLTPDERIQVFIENGHLIKDNLFNDVALRKGTLQKEALVRKPNNLTAKEGILKKRKKHIKYLDSILMSELLIGRPNKDGNTKAGPDNNNDTDLSNQNNGDSTKNKTNKGKTAKESETTNKGQSNDEFIEITIDTGEPIVPTEQTNPNEPKKAKKQTQKRKLINKNSEVIEITIDTDNPVEVDQTNSIDDPKKNKKNKDSKILAQRLKQMKKVKLSNGVSLSLTDYQCDHCQIKFCSKSSLQRHMLMHLDLKPYSCAHCPNRKFRQRGNWRVHMSQNHPDAFEKIKYECKICKKSFALLEHFKLHQKMHENERQLRRYTCVFCEKVFKQKRQLTKHEKYHMAPGRYKCAMCTMSYESRLLYSNHLKMHNQVQNFSCQLCGKSYLRSSSIARHIRVSHGGMRMQCPVCNKLLKGHLTEHMRTHENQRPHKCDVCGQKFTQSTQLTVHKRSHTGARPYPCRICKQPFTHSNALMLHIRRHTGEKPFECAMCPQTFSQLPHMKAHMRSIHNKSEFYKCSNCNTFFKLKTLLEAHSEECGEAGGGKKKDKDETLVSRMRFLLALLFTMIASKEKLIVLGFNKRRIDDILVDSIEAMGLSPSKDASLPTLARLQTNALMLLRGTVPKHEMALFENENKSPEQILELLTDDLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00658710;
90% Identity
iTF_00656403; iTF_00658710;
80% Identity
-