Basic Information

Insect: Epinotia ramella
Gene Symbol: prg
Assembly: GCA_947578815.1
Location: OX388200.1:48051912-48053709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.08 6.5 8.4 1.7 1 21 175 195 175 198 0.85

2 10 0.0042 0.34 12.4 0.6 1 23 204 227 204 227 0.96

3 10 9.7e-07 7.9e-05 23.8 1.4 1 23 233 255 233 255 0.96

4 10 4.9e-07 4e-05 24.8 4.9 1 23 261 283 261 283 0.99

5 10 0.001 0.083 14.3 1.4 1 23 289 311 289 311 0.97

6 10 0.0011 0.087 14.2 0.5 1 23 317 339 317 339 0.95

7 10 0.0001 0.0084 17.4 1.0 2 23 430 452 429 452 0.95

8 10 3.9e-05 0.0032 18.8 2.9 1 23 458 480 458 480 0.96

9 10 4.2e-06 0.00034 21.8 2.8 1 23 486 508 486 508 0.98

10 10 0.0017 0.14 13.6 0.0 3 23 517 537 515 537 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.08	6.5	8.4	1.7	1	21	175	195	175	198	0.85
2	10	0.0042	0.34	12.4	0.6	1	23	204	227	204	227	0.96
3	10	9.7e-07	7.9e-05	23.8	1.4	1	23	233	255	233	255	0.96
4	10	4.9e-07	4e-05	24.8	4.9	1	23	261	283	261	283	0.99
5	10	0.001	0.083	14.3	1.4	1	23	289	311	289	311	0.97
6	10	0.0011	0.087	14.2	0.5	1	23	317	339	317	339	0.95
7	10	0.0001	0.0084	17.4	1.0	2	23	430	452	429	452	0.95
8	10	3.9e-05	0.0032	18.8	2.9	1	23	458	480	458	480	0.96
9	10	4.2e-06	0.00034	21.8	2.8	1	23	486	508	486	508	0.98
10	10	0.0017	0.14	13.6	0.0	3	23	517	537	515	537	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATTGCTAATTTTCACACGTTGTGTCGCCTGTGTTTGAGCAAGAGCTCTCTGATGGTGTCGATTTTCGGAGCTGCGCCTGATGATGAAACGAATTCGGCACTAAACTCGAAAATCGCAGAATTTGCTGAACTGCAGATGGACCCTAATGATGGCTTACCTGGAAGAATCTGCTACAAGTGCTTGTTCAAAGTAGATAAATGTTCAAAATTCAGACTACAATGTATACAGAATGAGACAAGACTAAGACAAATAACTAACAGAGTCAATGAACAGGAGAACTCCAATTCCTCCGAAATGTCTAACTTCTACACCACCACTCAAGACTTAAACAAACAGGATTACATTTTAGAGGATAGTGTGGTAATGGTGGTTGACCCAAGCCTAGACTATGACTCTTCAGAAGAGTCTGACAATGCAGATCAACCAGATGCAGATGCAGATGCCACTGAAGGAAACAACACGCCTGAAGGAGACCACATGCCTGAATCATTCTTCAAAAATGTATTCATGTGCCAGTATTGTGACCAAGCTTTCATTTCTCAAGACAAGTGTAAAGAACATGAGCTGGCCTACCACGACCCCAACCTACCATTTAAATGTATGGAGTGCAGTTTAGTTTTCCCTGAGCGAAGCCAGTATGTGCAGCACACCAAGCAAGTGCACGGCAATGACAAGCCCTACCACTGCCCCGAGTGTGATAAGTCTTTTGGTCGCAGGTCTGACTTGAGGAAGCATTCCATAGTACATACAGGCATCAGACCTTATCAGTGTCATTACTGTCTCAAGAGCTTCTCCCGGAACACTAATCTTAGTAAACATCTGAGGATCCATGCAGGGCACAAGCCTCATGTGTGCCCCTTATGCCCGAGGAGCTTCGTGTGTCGTAATGACCTGCAGCGCCATGTCTTAGTCCATTCCGGTATGAAACCTTATGCCTGCCGTAAGTGCCCTTTGACATTTGGGAGAAGAGATAAACTCATCAAACATGAAGTCAGACACGGTCCGCTCAGCCCTAACCAAGTGCATGAGATTGATAATGACCAAGAGACACATGACATGGTTGTCAATGTCAATCCCTACAGCAACTTACTCACGTCTCCAACCCACCAAAATGCTGACTATGATCTCCCTAGAGTACCAGACCATATTTCTGGGGTTGGCAGTTTTGTAAATCAAATTCACAAAAACCCAACCGCCTCAGGAAAACTAACAACGTCCCCGCCGAAACCAAAACCAGCTGTTACAAATAAAAATAAACCTAAAAATATTAAATGTCACCAATGTCCAAAAAAGTTTTCCTCGCTAGATGCATATAAGACGCATGTATCAATAGCACACATTGGCAATAGAGGATTCCAATGCAAGATTTGCTTCAAGAAATTCTCTCGCAAGAGGGAGCTGGATCGTCATGTGACTCTTCATTCTGGTATGAAGCCTTTCTCATGTGGCCAATGTGACAAGAAATTCAACAGGAAAGACAAACTGAATAAACATGAGCAAACTCATGAATGCCTGGTTGTGAATATGCCCTGTATTGAATGTGGGGTCACTTTTGAGAAAAAAGCTGATTTGGTGGCCCACATTAAATCCCATTTCACTGATAATTTTGATGACAAGCCTGAGATTAAGAAAGAAGATGACCCAGAGTTCCCGATGGACGAAAACTATTATGACTTAGAAACCTGA
Protein Sequence: MEDSYIIANFHTLCRLCLSKSSLMVSIFGAAPDDETNSALNSKIAEFAELQMDPNDGLPGRICYKCLFKVDKCSKFRLQCIQNETRLRQITNRVNEQENSNSSEMSNFYTTTQDLNKQDYILEDSVVMVVDPSLDYDSSEESDNADQPDADADATEGNNTPEGDHMPESFFKNVFMCQYCDQAFISQDKCKEHELAYHDPNLPFKCMECSLVFPERSQYVQHTKQVHGNDKPYHCPECDKSFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVCRNDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVRHGPLSPNQVHEIDNDQETHDMVVNVNPYSNLLTSPTHQNADYDLPRVPDHISGVGSFVNQIHKNPTASGKLTTSPPKPKPAVTNKNKPKNIKCHQCPKKFSSLDAYKTHVSIAHIGNRGFQCKICFKKFSRKRELDRHVTLHSGMKPFSCGQCDKKFNRKDKLNKHEQTHECLVVNMPCIECGVTFEKKADLVAHIKSHFTDNFDDKPEIKKEDDPEFPMDENYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00149713;
90% Identity: iTF_01072823;
80% Identity: -