Basic Information

Insect: Epinotia ramella
Gene Symbol: L
Assembly: GCA_947578815.1
Location: OX388203.1:17167716-17174454[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.61 50 5.6 8.5 1 23 3 25 3 25 0.97

2 16 1.2e-06 9.6e-05 23.6 4.0 1 23 31 53 31 53 0.99

3 16 3e-05 0.0024 19.1 0.1 1 23 59 81 59 81 0.98

4 16 0.00035 0.029 15.8 0.1 2 23 97 119 96 119 0.95

5 16 6.8 5.5e+02 2.3 0.1 9 23 150 165 146 165 0.93

6 16 0.34 28 6.4 0.0 3 23 218 238 217 238 0.97

7 16 0.016 1.3 10.6 0.0 2 23 252 273 251 273 0.91

8 16 5.3e-05 0.0043 18.4 0.6 1 23 281 304 281 304 0.94

9 16 0.037 3 9.4 0.1 1 23 309 332 309 332 0.92

10 16 0.0009 0.073 14.5 0.2 1 23 390 414 390 415 0.96

11 16 0.00023 0.018 16.4 0.1 2 23 484 505 483 505 0.96

12 16 0.19 15 7.2 0.0 1 23 513 535 513 535 0.97

13 16 2.1 1.7e+02 3.9 0.7 2 23 543 564 542 565 0.93

14 16 0.99 80 4.9 0.3 1 23 641 663 641 663 0.94

15 16 0.004 0.32 12.5 0.1 1 20 671 690 671 693 0.95

16 16 0.31 25 6.5 0.6 1 23 700 722 700 722 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.61	50	5.6	8.5	1	23	3	25	3	25	0.97
2	16	1.2e-06	9.6e-05	23.6	4.0	1	23	31	53	31	53	0.99
3	16	3e-05	0.0024	19.1	0.1	1	23	59	81	59	81	0.98
4	16	0.00035	0.029	15.8	0.1	2	23	97	119	96	119	0.95
5	16	6.8	5.5e+02	2.3	0.1	9	23	150	165	146	165	0.93
6	16	0.34	28	6.4	0.0	3	23	218	238	217	238	0.97
7	16	0.016	1.3	10.6	0.0	2	23	252	273	251	273	0.91
8	16	5.3e-05	0.0043	18.4	0.6	1	23	281	304	281	304	0.94
9	16	0.037	3	9.4	0.1	1	23	309	332	309	332	0.92
10	16	0.0009	0.073	14.5	0.2	1	23	390	414	390	415	0.96
11	16	0.00023	0.018	16.4	0.1	2	23	484	505	483	505	0.96
12	16	0.19	15	7.2	0.0	1	23	513	535	513	535	0.97
13	16	2.1	1.7e+02	3.9	0.7	2	23	543	564	542	565	0.93
14	16	0.99	80	4.9	0.3	1	23	641	663	641	663	0.94
15	16	0.004	0.32	12.5	0.1	1	20	671	690	671	693	0.95
16	16	0.31	25	6.5	0.6	1	23	700	722	700	722	0.93

Sequence Information

Coding Sequence: ATGCCGTTCCGCTGCGAGTTCTGTTCCCGGCACTTCAAGCACAAGCGCTCCCGCGACCGGCACGTCAAGCTGCACACCGGTGACCGCAAGTACCGCTGCCCGCACTGCGAGTCTGCCTTCTCCAGGAGCGATCACCTAAAGATCCACATGAAGACGCACGATATCCAGAAGCCGTTCCAATGCACCGTGTGCAACCGCGGCTACAACACCGCGGCGGCGCTGACGTCGCACATGCAGGGCCACAAGCGCGACCGCGAGGGCCGCGAGACCGACCGCCGGCGCGCGCTGCGCTGTCCGCGCTGCGGGGACGCCTTCCGCAGGACTGATCTCCTGCAGGCTCATATGACGAGTGCTCACGGCGTGGACGCGGCGGCACTCACGCCTCCGCGGCGCGTCGCCTCCCAACCGCCGCCCACTCTCCTCGCCTGCATATACTGCACACGTGATACCTTCACGAGCATGGAACAGTTGCAATTACACGTCCGAGCAGCTCACTCAGCGTTGCTGAATGGAGAAACCCCTGTCGATCAAAGCGTTGACCAGCCCGCCCCGACCGATCTCAGCAGAAGAGCGCCCGACGAACCACCTCTCAAGCGTCGTCGTTCGGACTCTGCAACGCCACAATTAGCTTTGTCTCCTGGAACGCTTCTCTGCAATCAATGCGACGCGGCTCTTCCGGATTTTGAAGCGTTCCGCGCGCATTTGAAGGGTCATCTCGAGGAGGGTGGCGAGTTGAATCGGTCTAGCCCTACGCCGTGTCCTCACTGCGGGGCGTCGTTCGCTGACGCAGCGGCGTCCGAGCGTCACCTCGCCGCGCACTACCTGGCGGTGTCCTGCGAGTACACCTGCCACAGCTGCGCGCGCAGCTTCCCCACGCCGGATGATCTGCAGAAGCATCTACTGGATCTCCACGCTCATCACCTCTACCGTTGTTCGCTCTGCAAGGAAATTTTCGACTCGAAAGTAGCCATTCAAGTGCACTTCGCAGTGGCGCATAGTGGCGAGAGCAAGGTGTGGGTGTGCCGCTCGTGCGGCGCGGCGGGCGGCGCGCTGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCGCGCGCGCCACGCGTCGCGCTGCGCGTGCGGCGCCGTGCTGCCGGGCGCGCGCGCGCTGCGCCAGCACGCGCAGCTGCACGCCTACCGCTGCCCCGCGCCCGGCTGCCAGGACTCCTTCGCCGTGCAGTACCTGCTCGAGCGGCACATGCAGGCGCACCACGCCGTGCCGCACCAGGGTGTGAATGGCGAAAGCGCACGCGCCAAGCGAGTAGACAACAACAACTCAGCCGAGGGCGCGGACGGCGCGTGCTCGCCGTGCCTCGGCGGCGAAGCGCTCGCGAGCGGCGGTGGTGGCGCGGGCGGGGCGGGCGGCGCGGGCGGCGCGGGCGACGAGCGCCGCCGCAAGAACGGCGCCGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCGCACTCGGGCGCCGCCGCCGCAAGACACAAGTGCCTCATCTGCGACGAGATCCTGCCCTCCGCCGCCGTGCTTGCAGAGCACAAGCTCACGCACTGCAAGGTGGTAGCAGGCGACACGTGCGCCCGATGCCGCGCGCGGCTGCCGTCAGAGGAGTCGTTCCTGAGCCACATGGCGCGCCACCACCCCGCGCTGCCCGCGCCCTGCGTCGTGTGCCGCCAGACGCTCGCCTCCGAGCCCGAGGCGCGCCTGCACGCGCGCTTCCACCTGCGCTGCTCCGGCGACGAGCAGCGCTGCGCCATCTGTCTACGCGCGCTCCCGGACGGAGAGACAAACGCCGGTTCCGGCGCGCGCGCCTGCGCCGCCTGCTACGCGCGCCACGCCGCGCCCCGCGCGCCCGCCCCAGCCGACCACGACTGCCGCCTCTGCCGCCGCGCCCTCGGCTCCCCCACCCGCCTCCAGGCCCACCTCATCGAGCACACCTTCGCCGGCATCGGCGCCTTCACCTGCTACCTCTGCTCCGCCGTGTTCACGAGCGCCGCCGGCCTGCAGCGCCACCTGCCCGAGCACGCGGCCGCGCCCCGCCCCTACGACTGCGCGCGCTGCGGCCTCAAGTTCTTCTTCCGCGCGGAGCTCGACAACCACTCGTTCGTGCACCTGGAGGAGGCGGAGATCGCGCAGCGCGCGTTCTACGAGGCGTACGCGCGCGGCGCGGCGTCCGCGTGGGCCGCGCTGGCGCCGCCGGAGCCGGCCGCGGCCGCCGGCGCCGAGCCGGACGCGCCCGTCAAGCGCGAGCCCGAGATCAAGGAGGAGAAGACGGACGAGTATATCGAGGTGGGCTCGCCGCCGCCGCCGCCCGTGGCGTCCCCGCCGCCGCTCGTGAAGCTGGAGAAGCCCGACGAAGACTGA
Protein Sequence: MPFRCEFCSRHFKHKRSRDRHVKLHTGDRKYRCPHCESAFSRSDHLKIHMKTHDIQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRETDRRRALRCPRCGDAFRRTDLLQAHMTSAHGVDAAALTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPVDQSVDQPAPTDLSRRAPDEPPLKRRRSDSATPQLALSPGTLLCNQCDAALPDFEAFRAHLKGHLEEGGELNRSSPTPCPHCGASFADAAASERHLAAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRSCGAAGGALRSEAEGAAHVRARHASRCACGAVLPGARALRQHAQLHAYRCPAPGCQDSFAVQYLLERHMQAHHAVPHQGVNGESARAKRVDNNNSAEGADGACSPCLGGEALASGGGGAGGAGGAGGAGDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLSHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRCSGDEQRCAICLRALPDGETNAGSGARACAACYARHAAPRAPAPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHSFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPAAAAGAEPDAPVKREPEIKEEKTDEYIEVGSPPPPPVASPPPLVKLEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01437318;
90% Identity: iTF_00411731;
80% Identity: -