Basic Information

Insect: Epinotia ramella
Gene Symbol: su(Hw)
Assembly: GCA_947578815.1
Location: OX388218.1:9999290-10010865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0042 0.34 12.4 0.1 2 22 23 43 23 43 0.95

2 17 0.0001 0.0081 17.5 4.3 1 23 62 85 62 85 0.97

3 17 4.2 3.4e+02 3.0 0.3 2 23 93 115 92 115 0.92

4 17 0.00018 0.015 16.7 1.7 1 20 120 139 120 141 0.96

5 17 5e-07 4.1e-05 24.7 0.1 1 23 152 175 152 175 0.96

6 17 9 7.3e+02 1.9 9.4 1 23 181 204 181 204 0.95

7 17 0.00013 0.01 17.2 0.1 1 23 211 233 211 233 0.97

8 17 0.017 1.4 10.5 0.1 1 23 238 260 238 260 0.98

9 17 4.2e-06 0.00034 21.8 1.6 1 23 266 288 266 288 0.98

10 17 0.7 57 5.4 0.2 3 15 293 305 292 307 0.88

11 17 0.0014 0.12 13.8 0.2 5 23 307 325 305 325 0.95

12 17 0.7 57 5.4 0.2 3 15 330 342 329 344 0.88

13 17 0.00054 0.044 15.2 0.2 5 23 344 362 342 362 0.95

14 17 3.4e-05 0.0027 19.0 0.2 3 23 367 387 366 387 0.97

15 17 0.066 5.4 8.6 0.1 3 23 395 420 393 420 0.89

16 17 0.00013 0.011 17.1 3.3 1 23 426 448 426 448 0.99

17 17 5.3 4.3e+02 2.6 0.7 3 23 456 479 455 479 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0042	0.34	12.4	0.1	2	22	23	43	23	43	0.95
2	17	0.0001	0.0081	17.5	4.3	1	23	62	85	62	85	0.97
3	17	4.2	3.4e+02	3.0	0.3	2	23	93	115	92	115	0.92
4	17	0.00018	0.015	16.7	1.7	1	20	120	139	120	141	0.96
5	17	5e-07	4.1e-05	24.7	0.1	1	23	152	175	152	175	0.96
6	17	9	7.3e+02	1.9	9.4	1	23	181	204	181	204	0.95
7	17	0.00013	0.01	17.2	0.1	1	23	211	233	211	233	0.97
8	17	0.017	1.4	10.5	0.1	1	23	238	260	238	260	0.98
9	17	4.2e-06	0.00034	21.8	1.6	1	23	266	288	266	288	0.98
10	17	0.7	57	5.4	0.2	3	15	293	305	292	307	0.88
11	17	0.0014	0.12	13.8	0.2	5	23	307	325	305	325	0.95
12	17	0.7	57	5.4	0.2	3	15	330	342	329	344	0.88
13	17	0.00054	0.044	15.2	0.2	5	23	344	362	342	362	0.95
14	17	3.4e-05	0.0027	19.0	0.2	3	23	367	387	366	387	0.97
15	17	0.066	5.4	8.6	0.1	3	23	395	420	393	420	0.89
16	17	0.00013	0.011	17.1	3.3	1	23	426	448	426	448	0.99
17	17	5.3	4.3e+02	2.6	0.7	3	23	456	479	455	479	0.82

Sequence Information

Coding Sequence: ATGCCACCTAAACGTAAAAGACTGGGGCGGCCTCCGGGCTCCAAGAAAAAGGTTCATGTAAAAAATGAATGCAACTACTGTTCTGTTTCTTTGAGGACCAAAGCTGCTTTGGTGAAACATTTGCGCGTATGCAAACAGAAGAAGCTGGTTAAGCTTCTCGATGTTGACGCCAAAAAGGCCGTGTTTAGCTGCACAGAATGCAACAAGAAGTTCAGGTTCCAGAGAAGTTTTTCCAAACATCTGAAGATGGAGCATTCAAAGCTCGCAACCGCAGTGAGGTGTAAGCAGTGCATAGTGCGCTGTCCTGATGAGCGAGCACTTAAAGAGCATATTGCCAATGTGCATGAGCGGGAGATATTTAAGTGTGAGCATTGTAAGAAGCAGTTTGTCAGACGGGCTCATGTGCTGCGCCACATTGCTCAGAAGGGCTGTGATGGAACCGGAATTAATATGTTCCCTTGTGAAATATGTGATGCCTCATTTACCCGCAAAGACAACTTGATAGTACACTTGCGCCTACAGCACATCAACAAAAACAGGTTCCACTGCAAACACTGCTACTACCACACCAAGAACTTCTCCAAACTCATCATTCACAACCAGAGGAACCACTTAGAACCAAATAATTACTTTGAGTGTGACAACTGCGGCAAAGTCACGAGCTCGAGGGCCGCGATGGCCAAGCATTTAGAAATCCACGGGGAAAAGAAATACGAATGTGATGTGTGTGGCTACAGCACGTACACGATAGAGGTGATCCGGCGCCACGTCCTTACACACGTCGAGGATAAGCCGTACAAGTGCGCCATCTGCGGACACTCGTACATCCAGCGCTCGCAGCTGCAGCGCCACCTCGTGAAGCACACCGGCAACATGTGCGCCAAGTGCGGCGCCACCTTCAAGTCTAAAGCCAGTGTGATCTGCGGATACTCGTACATCCAGCGCTCGAAGCTGACGCGCCACCTCGTGAAGCACACCGGCAACATGTGCGCCAAGTGCGGCGCCACCTTCAAGTCTAAAGCCAGTGTGATCTGCGGATACTCGTACATCCAGCGCTCGCAGCTGACGCGCCACCTCGTGAAGCACACCGGCAACATGTGCGCCAAGTGCGGCGCCACCTTCAAGTCTAAAGCCAGTTTAATAATACATCAACGGGAGCACATGGGACTGGAGAAGCTTTACTGCCCGTACGATGATTGTCCTTACGCCAAAAAGGAATTTAGCAACGAGGCAGGCCTCACCAATCACGTGAAGTCTCATTTAGACGACAAACCGTACCAATGCGCGGTGTGCAAGAAGAGCTTCCACAGCGAGATCAACCAGCGTCGCCACATGCAGACGCACCAGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTCAGCGCGCGCGCTTACGTGCGCGGCGAGCAGCTCGTCAAGCATGTTCGCAAGTGCCACCCCGACCTGTTCCGCGCGCACTTGAGTCACGTGCGGCGCGTGCTGGGCACAAACAACAAAATCGACCGCGTGAAGAAGTCCGAGATGGACTCGGTCCTGAACGTGCTGGACGCGGAGTCCGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGCTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGAGTGAGAACAGCCCGCTGATGTTTGAGGAGGAGCTAGCCGACAGCCTGAAGAAGTTGCTGACGCAGCTCATCGACGTGGAGAAGCTTGAGTGCTTCGGCTGGCCTGACGAGAGCGTCGACGTGgtcctggagaaagtaattgagcaatgcggcgcgcgcgccgccgaccgtacgcgctggacgcgcgtacagcgcctgcgcgagaacaccaagcaactgttcctctacgtcatcgaggacgccaacatcgcacgcatgttggacacgcacaccatcgaccagatcgtcaaacacatattgacgcaggtcgccgagactgaGGGCGCTGAAATATAG
Protein Sequence: MPPKRKRLGRPPGSKKKVHVKNECNYCSVSLRTKAALVKHLRVCKQKKLVKLLDVDAKKAVFSCTECNKKFRFQRSFSKHLKMEHSKLATAVRCKQCIVRCPDERALKEHIANVHEREIFKCEHCKKQFVRRAHVLRHIAQKGCDGTGINMFPCEICDASFTRKDNLIVHLRLQHINKNRFHCKHCYYHTKNFSKLIIHNQRNHLEPNNYFECDNCGKVTSSRAAMAKHLEIHGEKKYECDVCGYSTYTIEVIRRHVLTHVEDKPYKCAICGHSYIQRSQLQRHLVKHTGNMCAKCGATFKSKASVICGYSYIQRSKLTRHLVKHTGNMCAKCGATFKSKASVICGYSYIQRSQLTRHLVKHTGNMCAKCGATFKSKASLIIHQREHMGLEKLYCPYDDCPYAKKEFSNEAGLTNHVKSHLDDKPYQCAVCKKSFHSEINQRRHMQTHQLDRPRRCMYCVSARAYVRGEQLVKHVRKCHPDLFRAHLSHVRRVLGTNNKIDRVKKSEMDSVLNVLDAESERILQGYGEGVLYGGVQELEPGAEEVEVPLKSENSPLMFEEELADSLKKLLTQLIDVEKLECFGWPDESVDVVLEKVIEQCGARAADRTRWTRVQRLRENTKQLFLYVIEDANIARMLDTHTIDQIVKHILTQVAETEGAEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00658709; iTF_00659663;
90% Identity: -
80% Identity: -