Eram026219.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388227.1:2164562-2176407[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00038 0.031 15.7 0.0 3 23 90 110 88 110 0.97 2 15 0.00012 0.0094 17.3 2.3 3 23 118 138 117 138 0.97 3 15 1.9e-05 0.0016 19.7 3.1 1 23 144 166 144 166 0.97 4 15 0.004 0.32 12.4 5.4 1 23 172 194 172 194 0.97 5 15 1.7e-05 0.0014 19.9 1.8 2 23 214 235 213 235 0.97 6 15 7.9e-06 0.00064 21.0 0.7 1 23 241 263 241 263 0.98 7 15 4.9e-06 0.00039 21.6 0.2 2 23 267 288 267 288 0.98 8 15 6.9e-07 5.6e-05 24.3 0.8 1 23 294 316 294 316 0.98 9 15 1.8e-05 0.0015 19.8 2.7 1 23 322 345 322 345 0.98 10 15 0.00019 0.016 16.6 6.1 2 23 485 506 484 506 0.97 11 15 2.5e-06 0.0002 22.6 2.3 2 23 511 532 511 532 0.97 12 15 1.5e-05 0.0012 20.1 3.6 1 23 538 560 538 560 0.98 13 15 0.00023 0.019 16.3 1.3 1 23 584 606 584 606 0.98 14 15 4.6e-06 0.00037 21.7 2.3 1 23 612 634 612 634 0.98 15 15 2.7e-06 0.00022 22.4 4.1 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGGCTTGCAATTACTTATCGGTAAAGCCAGACCCAGAATGGGCTACGGCTGCGAATAACAGTGATAAAACGCATCAGGATGAAAGTCAGAACTTCATTGTTGGTCACAGTCAAGCCCCTGATAGCGAAATTAAAAAAGAAATGCGTCAAAACGCAGGCGTTGATGTGAAACCAGCGGCCGGCGAATCGAGTATAAACGACCTAACGGAAGTGAAGCCGAAGGAGCCACTTAGGGTGGCAACACCAGGGTCACACCGCAGATGGGCGTGTCCAGAATGCGGGAAGGTGTCCTGGTCGCCGGCGCACCTGCGCATCCACCTGCGCGTGCACACGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCCAGGTTTCGCACCGACGGGAACCTGGCGCGGCATCTGCGCGCGCACCGCGGGGAGAAGCCGTTCGCGTGCCGGCATTGCACCAGGAGATTCACCCAAAAGTCAGTGCTAATCAAGCACATCCGCATCCACACTGGTGAGACCCCCTACGCCTGCAATATCTGCCACAAGCAGTTTTCCCGAAGCTTCACCCTGGCCTGCCACCGACGCGTGCACGGAGACGCCAAGGAAGCCCCAGGCCTCCGACCGGAGCCCCCGCCACCGGAGAAATGGACCTGCGAAGTGTGTGATAAGACTTTTAAGAACAAATCCTACAGGCATGCGCACATGCTGATACATACACGGACTAAGGAATTCCAGTGCCAAGTGTGTGAAAAAAAGTTTTCTAGTGAAGGGAGTTTGATGAAGCATTTGACGGTTCACAGTCAGGCTAAGTGCAGTGTTTGTGGTAAAGAGTTGAAGACTCAAGCGAATTTAGTCAGGCATATGCTGGTTCACACGGGGGAGAGACGGTTTCCTTGTAGTTATTGTGGTAAGAGGTTCACTCAGAAGTCGGTGCTGGTTAAACATGAGAGGATACACACAGGTGAAATGCCGTATCAGTGTGATTTGTGTTTTAAGAAGTTTTCTAGAAGTTTCACACTGGAGAATCATTTGAAGCGAATTCATAGGAAAGAGAAAGTTGAGAAGCTTGATAAATCTGAAAACAGATCTGAGAATGTGAAGCCGTTTTGGTGTGAGAAATGTGATAATTGGTACAACAGTCGAGAGTTTTATGCACATGAATGTGACAAAGGAGAGAAGTTTAACTTTGATGATGTTTGTGAGGAAAATGAACCAGAAATTAATTATAGTGACAATGAAGGTAATGATGGAAATTATAGTCCATTTGTTGAAGTCAAAGTAGAAGAAATAGAACATATAGAAGTTAATAAAATAGATGAAGTTAAATTTGAAAATGAAATTAATAGTCCAATAAGCAATGATGATATAAAAGAGAATTCAATCAGCAATACTGTCACAGATTTTTTAATAGATAATGATGTAAAAACAATAGTTAAAAACAAAAAAGAATGCAAGAAATGGTCGTGCAGCCATTGTAAAAAGACTTATAAAAAGAAATCTCAATACCAGACGCATTTAAAATCTCACGACACTAAAGGCTATTGCGAGAAATGTAATAAGCATTTCAACACCAACGGGAATCTCATCAGGCATATGCTGATCCACTCTGGTGAGAAACCATTCCACTGCAAAATCTGCAATAAACGCTTCACCCAGAAGAGCGTCCTGGTCAAGCACGAACGAATACACACCGGAGAAATGCCCTATAGCTGCGAAGTGTGCAAAATAGAAGATATCCAAGAAGACCTCAGCAAGCAGTTCGTCTGCGGCGTGTGTCGACGGCGCTTCGGCAACTGCTACCTGCTCGAGCGGCATGCGCGCGTGCACTCCGGAGAAAAGCCCTTCGACTGCGAAGACTGCCACAAGAAGTTCGCACTCAGCGGCGACCTGAACCGCCACCGCCGCACGCACACTGGGGAGAAACTCTATCGCTGCGACATCTGCCAGAAACGGTTCACCCGAAGCGGCACGCTCAAACACCATCTCAAGTTACACGACACCACAGAATAA
- Protein Sequence
- MACNYLSVKPDPEWATAANNSDKTHQDESQNFIVGHSQAPDSEIKKEMRQNAGVDVKPAAGESSINDLTEVKPKEPLRVATPGSHRRWACPECGKVSWSPAHLRIHLRVHTGERPACCHVCGARFRTDGNLARHLRAHRGEKPFACRHCTRRFTQKSVLIKHIRIHTGETPYACNICHKQFSRSFTLACHRRVHGDAKEAPGLRPEPPPPEKWTCEVCDKTFKNKSYRHAHMLIHTRTKEFQCQVCEKKFSSEGSLMKHLTVHSQAKCSVCGKELKTQANLVRHMLVHTGERRFPCSYCGKRFTQKSVLVKHERIHTGEMPYQCDLCFKKFSRSFTLENHLKRIHRKEKVEKLDKSENRSENVKPFWCEKCDNWYNSREFYAHECDKGEKFNFDDVCEENEPEINYSDNEGNDGNYSPFVEVKVEEIEHIEVNKIDEVKFENEINSPISNDDIKENSISNTVTDFLIDNDVKTIVKNKKECKKWSCSHCKKTYKKKSQYQTHLKSHDTKGYCEKCNKHFNTNGNLIRHMLIHSGEKPFHCKICNKRFTQKSVLVKHERIHTGEMPYSCEVCKIEDIQEDLSKQFVCGVCRRRFGNCYLLERHARVHSGEKPFDCEDCHKKFALSGDLNRHRRTHTGEKLYRCDICQKRFTRSGTLKHHLKLHDTTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -