Eram031610.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388202.1:339529-369435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.7e-07 4.6e-05 24.6 5.4 1 23 147 169 147 169 0.99 2 16 8.7e-05 0.007 17.7 1.0 1 23 175 197 175 197 0.97 3 16 4.2e-06 0.00034 21.8 0.3 1 23 203 225 203 225 0.98 4 16 1.2e-05 0.001 20.3 1.0 3 23 233 253 231 253 0.97 5 16 1.2e-05 0.001 20.3 1.0 3 23 261 281 259 281 0.97 6 16 1.2e-05 0.001 20.3 1.0 3 23 289 309 287 309 0.97 7 16 1.2e-05 0.001 20.3 1.0 3 23 317 337 315 337 0.97 8 16 1.2e-05 0.001 20.3 1.0 3 23 345 365 343 365 0.97 9 16 1.2e-05 0.001 20.3 1.0 3 23 373 393 371 393 0.97 10 16 1.2e-05 0.001 20.3 1.0 3 23 401 421 399 421 0.97 11 16 0.0036 0.29 12.6 0.2 1 23 443 465 443 465 0.95 12 16 0.0088 0.71 11.4 0.1 2 23 470 491 469 491 0.95 13 16 0.025 2 10.0 0.0 2 23 496 517 495 517 0.95 14 16 0.0088 0.71 11.4 0.1 2 23 522 543 521 543 0.95 15 16 0.0088 0.71 11.4 0.1 2 23 548 569 547 569 0.95 16 16 1.3e-06 0.0001 23.4 2.9 1 23 575 598 575 598 0.97
Sequence Information
- Coding Sequence
- ATGGAATCGCAAGTTTGCGTCCATTGTCTGAACAAGAAGATCATAAACTCGACAACCAACCGGTTGGTGACTGAAAGATGTGGTCATGTGAAGTGTATGGACTGTTTGTTGCACGAGAATACGGGTTGCGTTGCTTGTGTGGAGAAGGCCATTTGTAAGGAGCCCGAAGACACCCCGGAGCCGAGCGAGGGGCCACCGTCGGATGGCGACAACGACTTCCCTCTCAAACACTTCCTGCTGGGAGAGTGCCAGGAGAAGGATGCGCAGACTGAGTACTACTGTGAGAAGAGTGATAAGAAGAAGAAGCTGGAGACATCTCACATTAGGATAGAAACAGACGGGACTCGGCGGTATTACTTCTGCACAGCATGCAAGAGGAAGTTCCAAGCACGCAGCCAGGTCTCGTACCATGCTTACTGCAACGGACAGCAAAAGCCCTACCAGTGCCCTGAGTGCAATAAGAGTTTCGCTTCGCACTCCCACTTCAAGTACCACATGCGCGTGCACCGCAACGAGCGCACGTACGCCTGCGAGCTCTGCGGGGAGAGCTTCTTCCAGATGTCCAAGCTGCAGCGGCACAAGCTCAAACACACGAAGGAGAAGAAGTACCCGTGTCCAGAGTGCAGCAAAGCGTTCAACAACCTGACGTCTCTCCGAAAACACGCGCTCACGCACTCAGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGACGAGCGGCCATACGGCTGCGAGACTTGCGGCCGCCGCTTCAGGGACTCCAGCAACTACCGCAAGCACGTGGCCAAACACAACGGTGGCGGCTGCACGCGCGCGTGCGCGTGCGGGGCGTGCGGGCGGCGGCGCGCGCGCGCGCACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACATGCGCCGCCACGCCGCCGTGCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACATGCGCCGCCACGCCGCCGTGCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCGCCGCGCGCAAGGACATGCGCCGCCACGCCGCCGTGCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACATGCGCCGCCACGCCGCCGTGCACTCAGGCGGCGACGTGTGCCCGCGCTGCCCGCAGGCCTTCACCGCGCGCAAGGACATGCGCCGCCACGCCGCCGTGCACTCAGATTTGAAGCCGTTCCGCTGCCGCGTCTGCTCGCGCCGCTTCCGGCGGAAAGACAACCTGGAGCGGCACATCCGCAACACGCACCCCTCCGAGCCGCCCGCCGCCGCCGTCCTCTGCGAGCCCGAGGACTGCGCCAAGCACAAGAACGAGAAGCTGGACCCCAACAAAGAGAAGACTAAGCTAGAGAGCCTTAACCCGCTCCCGCCGCTGCCGCCCGAGGTTATCCAGAAGCATATGCACGAAGATCAGAAGCCTAAACGGCGCCTGATCGCGCTGCTCCCACCCATCGACGAGCGCAAGTTCACGGAGCTCTGCATGCGCGGCCCGCAGGACCAAAAGCCTCCAGCTGAACAAGTGTCAGAAAAACCAGAGCCGAAAATGGATCAAAAGGCGGGCGTGGAACAGAAGATAAAGGCGGGCGCGGAACAAAAGCCGAAGGCGGAACAAAAGCCGAAGGCGGAACAGAAGTCGCTGGCGGAGATCTTGGCGGCCAACAACGCGCGCCAGAGCGTCATCTTCGGGCCCGTGCGCCGCGTCGAGCCCGAGCCCAGCGAGTACGTGCACAAGATACGCAAGGCTAACCGACGCCTGCCCGCGCTGCTCCCGCCCATCGACGAGCGCAAGTTCTCGGAGCTCGTCAAACTCGGCCTGCAGAACAACCTGGACGTGGGCGCCCCTCCGGAGAAGTTCCGAGAACTGTACAAGAAGATCCTGTACGAGCGGTCGGAGAAGGAGGCCGCGCTGGTCGAGGAACAGCACTGGAAGAAGAAGAAACTCAACATCAACTGGATGCTGCCGGCAGGCCGCGTCGACGGCGTCGCCGACCACGATGCGCGCGGCACGTTGCCGTCTTCTGTGACGTCACATTCTTCCAGCGTCATCGTTTCATATGAAGTTGCGTTTTGCGAAAAAGGGACAGAACTAGAGGTGTGCGCCGATGGCAAAATCATCGGCGGCGGCGTCCGGTGGGATTTTGATCGGCGGCGGCGGCGTGATCGGCGTGAAATCGGCGTGGATTTTTTTTCCCGGAGTATCGAAAAATAA
- Protein Sequence
- MESQVCVHCLNKKIINSTTNRLVTERCGHVKCMDCLLHENTGCVACVEKAICKEPEDTPEPSEGPPSDGDNDFPLKHFLLGECQEKDAQTEYYCEKSDKKKKLETSHIRIETDGTRRYYFCTACKRKFQARSQVSYHAYCNGQQKPYQCPECNKSFASHSHFKYHMRVHRNERTYACELCGESFFQMSKLQRHKLKHTKEKKYPCPECSKAFNNLTSLRKHALTHSDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNDERPYGCETCGRRFRDSSNYRKHVAKHNGGGCTRACACGACGRRRARAHVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFAARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSGGDVCPRCPQAFTARKDMRRHAAVHSDLKPFRCRVCSRRFRRKDNLERHIRNTHPSEPPAAAVLCEPEDCAKHKNEKLDPNKEKTKLESLNPLPPLPPEVIQKHMHEDQKPKRRLIALLPPIDERKFTELCMRGPQDQKPPAEQVSEKPEPKMDQKAGVEQKIKAGAEQKPKAEQKPKAEQKSLAEILAANNARQSVIFGPVRRVEPEPSEYVHKIRKANRRLPALLPPIDERKFSELVKLGLQNNLDVGAPPEKFRELYKKILYERSEKEAALVEEQHWKKKKLNINWMLPAGRVDGVADHDARGTLPSSVTSHSSSVIVSYEVAFCEKGTELEVCADGKIIGGGVRWDFDRRRRRDRREIGVDFFSRSIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -