Eram028214.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia ramella
Gene Symbol
-
Assembly
GCA_947578815.1
Location
OX388225.1:526524-535135[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0019 0.15 13.5 1.1 5 23 8 27 6 27 0.95
2 16 2.6e-05 0.0021 19.3 0.2 2 23 49 70 48 70 0.97
3 16 2.5e-06 0.0002 22.5 0.4 1 23 76 98 76 98 0.98
4 16 2.3e-06 0.00019 22.6 0.3 1 23 104 126 104 126 0.94
5 16 1.5e-05 0.0012 20.1 0.6 1 23 132 155 132 155 0.98
6 16 7.8e-06 0.00063 21.0 0.5 1 23 186 208 186 208 0.99
7 16 1.5e-05 0.0012 20.1 0.6 1 23 214 237 214 237 0.98
8 16 1.5e-05 0.0012 20.1 0.6 1 23 268 291 268 291 0.98
9 16 1.5e-05 0.0012 20.1 0.6 1 23 322 345 322 345 0.98
10 16 1.5e-05 0.0012 20.1 0.6 1 23 376 399 376 399 0.98
11 16 1.5e-05 0.0012 20.1 0.6 1 23 430 453 430 453 0.98
12 16 1.5e-05 0.0012 20.1 0.6 1 23 484 507 484 507 0.98
13 16 7.8e-06 0.00063 21.0 0.5 1 23 538 560 538 560 0.99
14 16 7.8e-06 0.00063 21.0 0.5 1 23 566 588 566 588 0.99
15 16 7.8e-06 0.00063 21.0 0.5 1 23 594 616 594 616 0.99
16 16 9.5e-05 0.0077 17.6 0.3 1 21 622 642 622 643 0.96

Sequence Information

Coding Sequence
ATGGAGAAGAAATCAACGCAAAAGTGCCCCAAGACGTTCACGATGAAGCGCTCGCTGCAGGTGCACCGCAAGCGCATGCACCTGGAGGAGCTGCGGCTCGGCGAGCAGGTGCGCGAGCCGGCGCGCGCTGCCAGCCGCAGCAAGGTGTGCGACGTGTGCGGCCGGGCGTACAATTCGAACGCCGCCCTGCGCTATCACCAGCGGCGACACACTGGAGAGAAACCCTACGCCTGCACCATCTGCCCGAAGCGGTTCACCATGCCCATGTTCCTGCAGATTCACATGAGAACACACACGGGCGAGAAACCCTACGAGTGTCCACATTGTCCCAAGGCGTTCACCAACAAGGCGGCTCTCATCCGACACGACCGGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTTGTACACTATGCACTTACCAGTTCACTCCAGACCAGAGCTGGTTACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTTGTACACTATGCACTTGCCAGTTCACTCCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTTGTACACTATGCACTTGCCAGTTCACTCCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGCTATACACTATGCACTTGCCAGTTCACTCCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTTGTACACTATGCACTTGCCAGTTCACTGCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTTGTACACTATGCACTTACCAGTTCACTGCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGCTATACACTATGCACTTGCCAGTTCACTCCAGACCAGAGCTGGTCACCGGTCCCATCACTGCCTCCAGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTTATCAGCAAGGCCATGCTCAACAGACATGTGCGGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGATCCACACGGGCGCGAGGCCGTTCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGTCCAAGGCTGATGAGGGCGTGCCAAAACCACCGCCTCTAGGACTAGGGTATTCGGGAACGTCTAAGGCTGACGAGGACGAGCCAAAACCGCCGCCTCAAAGACGCAAGAGGGAAGGGAGGGGGCAGTGCTATCCGAAGCGGACTCCGGAGAACACTGTCGTTGAAGGCGCGCTCCGGCCTTTTAAAGCTGCCCGGTGTGACGTCACCGCTCTGCCCGCGCGCCGCGCCGCTCACCCCGTGCGCCGCCGCGCCGCTGCCGGTGTGCGACGCCCGCGCGTCGTCACATACTAA
Protein Sequence
MEKKSTQKCPKTFTMKRSLQVHRKRMHLEELRLGEQVREPARAASRSKVCDVCGRAYNSNAALRYHQRRHTGEKPYACTICPKRFTMPMFLQIHMRTHTGEKPYECPHCPKAFTNKAALIRHDRIHTGARPFKCGTCSKGFISKAMLNRHVRVRHVVHYALTSSLQTRAGYRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRIHTGARPFKCGTCSKGFISKAMLNRHVRVRHVVHYALASSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRVRHVVHYALASSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRVRHAIHYALASSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRVRHVVHYALASSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRVRHVVHYALTSSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRVRHAIHYALASSLQTRAGHRSHHCLQIHTGARPFKCGTCSKGFISKAMLNRHVRIHTGARPFKCGTCSKGFISKAMLNRHVRIHTGARPFKCGTCSKGFISKAMLNRHVRIHTGARPFKCGTCSKGFISKAMLNRHVRSKADEGVPKPPPLGLGYSGTSKADEDEPKPPPQRRKREGRGQCYPKRTPENTVVEGALRPFKAARCDVTALPARRAAHPVRRRAAAGVRRPRVVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-