Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.051 94 4.1 0.1 6 24 32 48 28 65 0.82

2 6 0.0038 7.1 7.7 0.2 16 43 88 116 81 117 0.87

3 6 1.2 2.2e+03 -0.3 0.3 13 24 129 140 125 158 0.78

4 6 6.5e-06 0.012 16.6 0.9 17 43 159 182 146 183 0.89

5 6 0.0087 16 6.5 2.2 12 29 183 200 180 216 0.80

6 6 8.6e-05 0.16 13.0 5.8 15 43 272 297 260 298 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.051	94	4.1	0.1	6	24	32	48	28	65	0.82
2	6	0.0038	7.1	7.7	0.2	16	43	88	116	81	117	0.87
3	6	1.2	2.2e+03	-0.3	0.3	13	24	129	140	125	158	0.78
4	6	6.5e-06	0.012	16.6	0.9	17	43	159	182	146	183	0.89
5	6	0.0087	16	6.5	2.2	12	29	183	200	180	216	0.80
6	6	8.6e-05	0.16	13.0	5.8	15	43	272	297	260	298	0.82

Coding Sequence: ATGAGACTACAGAAAACGTTTTCTTTTCTAGTGGACACACAAATCGATCCCGTGAGGAGAAACGCCGAGGCGATTATTAAGTACACGAGCGCTTATCCGTTCCGAGTGAACGATAAGTCTATACTTTGCGTGTACTGCGGGGACTTGTACGACGACCCCGCCCAGTTCCGTCTTCACATGGACCATGAACACGCTAAATTTAACTACCGCATGCCCTTCGAAAACCTTCCCAAATCAGAATACGTTAAAGTCGACATTTCTAATCTTAGATGTAGAATTTGTACAACAGCTTTTTCCAATTTAGAACAAGTTTTTGCACATTTAAAAGATCATTTGAAAACTGTGCACGAAAATTCTCCCCTTGGCGTGATGTCGTTCATTTTAGATGGCAGTGAGTGGACTTGCGCTGTTTGCCAAGCGGGATTACCTTCCTTATTGCATTTAAACAGGCATACAATAACTCATTTTAGAAGTTACGTGTGCGAAATATGTGGTAAATCTTATGTAGCTACCACTGGGCTCCTGCAACATGTAAGGAAGACTCATGAAAAGGAGTACAAGGCATACTGCAGGCGGTGCGGTATGGTGTTCTCTTCCATGGGTGCGAAGGTACTTCACCAAAGAACCGAGAAAAAGTGCATGTCTCACTGCTGCTCCGTCTGCCCCGATAGGTTCCCTACATGGGAAATGAAACAGCAACACATGGTTGAACAACACGGTGTGGTAAAGAAGGCTTATCAGTGTTCAGACTGTAACGTCACCTGTTCTAGTCGGAGGGCTTTCTATGATCATTATAAATTGTGCCATTCTATAGAATGTGTCGTTTGCGTACATTGCGGTTTAAGATTCGCGTCGTCCTCTCGGCTAAAAAGGCATTTAGGAAGAAAGCATACCCTGTAA
Protein Sequence: MRLQKTFSFLVDTQIDPVRRNAEAIIKYTSAYPFRVNDKSILCVYCGDLYDDPAQFRLHMDHEHAKFNYRMPFENLPKSEYVKVDISNLRCRICTTAFSNLEQVFAHLKDHLKTVHENSPLGVMSFILDGSEWTCAVCQAGLPSLLHLNRHTITHFRSYVCEICGKSYVATTGLLQHVRKTHEKEYKAYCRRCGMVFSSMGAKVLHQRTEKKCMSHCCSVCPDRFPTWEMKQQHMVEQHGVVKKAYQCSDCNVTCSSRRAFYDHYKLCHSIECVVCVHCGLRFASSSRLKRHLGRKHTL

Sequence clustering based on sequence similarity using MMseqs2