Eram009444.1
Basic Information
- Insect
- Epinotia ramella
- Gene Symbol
- -
- Assembly
- GCA_947578815.1
- Location
- OX388213.1:22337500-22345496[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-08 3.5e-05 24.4 0.0 4 37 302 335 299 341 0.88 2 2 3 2.8e+03 -0.9 0.0 2 13 637 648 636 652 0.85
Sequence Information
- Coding Sequence
- ATGGCGTCGCCAGCGTCGAAGGATGATCCAATCGTAGTGGAAGTGTGTGTGAAGTCAGAGCACTCTTTGGGTTTGGAGGGTGTCTGCATTAAAATGGAGCCCTTATTGGGCGATGATAACGAGCCCTCGTACTCGGATACGTGTGTGAAAGACGAGCCCTCGAGTCCGGAGGTCGCGGATGCTCGCGCCATCAGCGAGGCGGCGGCGGCCGCGCGGCTGTACGCCGACCACCTCGTGGAGGACGAGCTCGTCAGTACGAGCACCAGTGTGCAGCCGCGCCGCGTGCTCTGCACAGCGCCAGTTCAACGATTACTGGCGAATGTTAAGCAAGAGAAAGCCGACCCTGACAAAATAGCTGTCACACCGATCTCTGTAAAGCAGGAACCCAAATGGGAGACAGAAGAGAGGAACATGGTACAACCAAAAGGGGAGACGGGGATGATGGCAGCCTCCGATGGGGAACCTAAAAACGAGGCTGGGGGGAATATGCCAGCCTCTCATGAGGAAATGAAACAGGAGCTTTTGAAGTGTGAAGCTGATGACTGCAAACTGAATGAACCACAAAACAGAATGCCTGCTTCAAACCCTCTAAACCGAAACGGGCCTATGGTGTTCAAACGCATCTGGCTCCCTGACTCCGACTTTGATGATGCCGTAACTGGCAGTACCGCAACTGAATCCCCAGCTAAACGGGTTGGTGTGGGCAGCAGTCTTGTGAAGTCTCCAGTGAACAGGATTCTGGGTAGCAGTGCGCCTGCGACGGTCACCTCGCAGCCCGCGCAGGTTCTTGTTACAGCAATCAGGGAGAGCCGGTGTAGGAAGATGCTGGAAATGTTTCCGGAGATATCTCCTTCGGCAAACAGCAAAATGAATACGAGTAAAAAGAAACGATACACGGACATTCAATTACAAAGTGCTATATCGGCCGTTAAAGAAGGCATGAGTATTTCAAAAGTGTCAAAGAAATTTACTATTCCAAAAGCTACCCTTCATGATAAAGTTAGCAAAAAATATCAAGAAGGCGCAACTTCAGGTGCACACACAGTGCTTACAAAAGATGAAGAGGAGCAACTTGTATCTTGGATACTGTACCTTAGTGATGTTGGGTTTCCAATAACAAAACACAATCTTATTCATTCCGTGAAAAAGCTTGTAACAAACTTAGAAAGAGAAAATCCTTTCAAAAATGGATTACCTGGTCGACATTGGTATGAGGGATTTATGGCTAGACACCCCGAGCTTTCAATTAGAATATCACAGAGTCTCACCGCCCCAAGAGCTAATATTACGGAAGAATCTATTCGAGCCTGGTTTAGTCGCGTAGAAACATATGTTAAAAAACAAAATTTAGAAGAAGTTTTGACTGACCCGCAGCGTATATTTAACTGTGATGAATCAGCATTCTACTTGAGTCCTAAAGAAAATGCTGTAATAGTACAAAAAGGCAGCAATAGAGTATTCAATAAAACAGCGAATGATGAAAAAGAGTGTTTAACCGTTTTGATGACTGTGTCAGCGGACGGAAATATGCAGCCACCTTTAGTCATATTTCCATACAAGCGAACACCAGCAAGCATTATACTAAACATGCCGCGAAAATGGGGTATAGGTCGATCAGACTCAGGTTGGATGACTGGAGAAACCTTCTATGAACAAATTACAAACGTCTTCTACCCGTGGCTGATTGAAAATGAGATTCCTTTCCCAGTCATTTTGTTCGTGGATGGGCATTCGTCTCATATTAATTTGCCGTTGTCTGAATTCTGCCGAGAGAAAAAAATAATCTTAATTGCTCTCCTGCCAAACTCTACACACCGTCTCCAACCTCTAGATGTTGCAGTGTTTCGCCCATTAAAGGACCACTGGAAAGAGCAAAGACAAACTAATGATCAAAATAAGAAGTTAAAAAAGGAAGATTTTGCAAAAGCTTTGGACCAGTGCATTAAAAATGCTGCATTAAATAGTGCTATAATGAATGGTTTCAGAACCTGCGGTTTGTATCCTTTTGATCCGAATAATATTGACTACAGTAAACTTATTACACAAGTGGAGAAACAAGACCAAAATATCGCAAAAAAAACATCAAAGACAACAAGAACAATAGGTACCTTACTAGCAGAAGTCGAAATGAGGATTCCAGAAAAAGATCTCGAAGAATTCCAGATGTGTGGAGACACGTGGTCAGGAGAGCCTAAAAATGAAGGTTTATTTTATTTTTGGAAAAAAATTAATGATGAATGTTTAGAAGCCATATTGACCACGAAGAAACACTAA
- Protein Sequence
- MASPASKDDPIVVEVCVKSEHSLGLEGVCIKMEPLLGDDNEPSYSDTCVKDEPSSPEVADARAISEAAAAARLYADHLVEDELVSTSTSVQPRRVLCTAPVQRLLANVKQEKADPDKIAVTPISVKQEPKWETEERNMVQPKGETGMMAASDGEPKNEAGGNMPASHEEMKQELLKCEADDCKLNEPQNRMPASNPLNRNGPMVFKRIWLPDSDFDDAVTGSTATESPAKRVGVGSSLVKSPVNRILGSSAPATVTSQPAQVLVTAIRESRCRKMLEMFPEISPSANSKMNTSKKKRYTDIQLQSAISAVKEGMSISKVSKKFTIPKATLHDKVSKKYQEGATSGAHTVLTKDEEEQLVSWILYLSDVGFPITKHNLIHSVKKLVTNLERENPFKNGLPGRHWYEGFMARHPELSIRISQSLTAPRANITEESIRAWFSRVETYVKKQNLEEVLTDPQRIFNCDESAFYLSPKENAVIVQKGSNRVFNKTANDEKECLTVLMTVSADGNMQPPLVIFPYKRTPASIILNMPRKWGIGRSDSGWMTGETFYEQITNVFYPWLIENEIPFPVILFVDGHSSHINLPLSEFCREKKIILIALLPNSTHRLQPLDVAVFRPLKDHWKEQRQTNDQNKKLKKEDFAKALDQCIKNAALNSAIMNGFRTCGLYPFDPNNIDYSKLITQVEKQDQNIAKKTSKTTRTIGTLLAEVEMRIPEKDLEEFQMCGDTWSGEPKNEGLFYFWKKINDECLEAILTTKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -