Basic Information

Insect: Epinotia nisella
Gene Symbol: -
Assembly: GCA_932294385.1
Location: CAKOAM010000119.1:1-27804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00057 0.039 14.9 4.6 1 23 267 289 267 289 0.99

2 14 0.67 46 5.2 1.2 1 23 296 318 296 318 0.95

3 14 5.3 3.6e+02 2.4 0.5 1 21 322 342 322 343 0.92

4 14 0.67 46 5.2 1.2 1 23 410 432 410 432 0.95

5 14 0.32 22 6.2 1.2 1 23 436 459 436 459 0.97

6 14 0.15 11 7.2 7.2 1 23 466 488 466 489 0.96

7 14 3.6e-06 0.00025 21.8 0.2 3 23 496 516 495 516 0.97

8 14 2.5e-05 0.0017 19.2 4.9 1 23 522 544 522 544 0.98

9 14 0.00057 0.039 14.9 0.6 1 20 550 569 550 571 0.95

10 14 0.046 3.1 8.9 0.2 1 23 583 606 583 606 0.88

11 14 0.32 22 6.2 0.2 1 23 612 635 612 635 0.92

12 14 0.28 19 6.4 0.2 1 13 644 656 644 659 0.86

13 14 0.28 19 6.4 0.2 1 13 687 699 687 702 0.86

14 14 0.28 19 6.4 0.2 1 13 730 742 730 745 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00057	0.039	14.9	4.6	1	23	267	289	267	289	0.99
2	14	0.67	46	5.2	1.2	1	23	296	318	296	318	0.95
3	14	5.3	3.6e+02	2.4	0.5	1	21	322	342	322	343	0.92
4	14	0.67	46	5.2	1.2	1	23	410	432	410	432	0.95
5	14	0.32	22	6.2	1.2	1	23	436	459	436	459	0.97
6	14	0.15	11	7.2	7.2	1	23	466	488	466	489	0.96
7	14	3.6e-06	0.00025	21.8	0.2	3	23	496	516	495	516	0.97
8	14	2.5e-05	0.0017	19.2	4.9	1	23	522	544	522	544	0.98
9	14	0.00057	0.039	14.9	0.6	1	20	550	569	550	571	0.95
10	14	0.046	3.1	8.9	0.2	1	23	583	606	583	606	0.88
11	14	0.32	22	6.2	0.2	1	23	612	635	612	635	0.92
12	14	0.28	19	6.4	0.2	1	13	644	656	644	659	0.86
13	14	0.28	19	6.4	0.2	1	13	687	699	687	702	0.86
14	14	0.28	19	6.4	0.2	1	13	730	742	730	745	0.86

Sequence Information

Coding Sequence: ATGGAGGAATATACTTCTAAAATTGAATATGAGTTCAAACCAGACCCTGAACCTGAAAAAACTATATGCAGATGTTGTTTGACTACAGAAAAGCGTATGTTCAGTATTTCGCTTTTCGTCTCGCATTATTGGGATTTAGCAGGATTAAACGTATCAGAATCCGATGGACTCCCACCATGGTTGTGCCACGAGTGTGCAGGGCTGCTGCGGAAAGCGGTGCAGTTCAAACAGAAGCTCCTTAAAGCTAACTCAATGCTCTGCGACTATCTGATGAGATGTGCACCGTTCCCCATTGACGCAGACCCTGAGCTGTGCAAGTACGCCACGCCGAACCTCAGGGAAACCACTACTCTTGCCTTCGACAACACCGGGAAGAAACTGGGCTTCTACGAGACTTTAGAGCACGAGAAGCAGCTGGTAGACTCTGCCCTGGACACCATAGAGCTGCCGGCGCGCGCGGAGGCCGCCGGAGCGCTCAAGCTGGAGGTCGACTCCTTCTCCGACTATGAGGACAACATCACGCTTGAGGAGTTCAGATTGACCGTGCCAAAGACGGAGAATGACATCCCCGACGAGAGCCCGGTCAAGCTAGAAGACAGCAAGAAGAAGAAAAAAACCAAGAAGAAGGAGCCGCCCAAAGCCAAACGGAAGAAGACCAAAGAGCCAGCAGAAGGTGAAGAGCCCAAGACGAGTATCAGAAAGACCGTGGAGCTGGACCCCACCAAGATAAGGGTCGTCATGCTCAACCCGGAGGAGCAATTCAAACAGAGCGAGGAAGAGAGCAAAGCCAAGTTCCCGTACCAATGTCACCTGTGTTACAAGGGATTCAATTTTGACACCAAATTGGAGAATCACATGCGGAAACACAGTCCCTCGCGAGGCCGGTTCTCGTGCACGCTCTGCACCATGTACTTCCCGTCGGCGTACAGCCGCAGCGTGCACGCGCACATCCACACGCGCCGCTACGAGTGCTGCGCGTGCGGCCGCCGCATGACCGACAGGGCCTCCATACTCGACCACTACAGGTACTTAAATACAGGCGTGAGTGTCCGTATGTTTGCAGTCGCGAGGCCGGTTCTCGTGCACGCTCTGCACCATGTACTTCCCGTCGGCGTACAGCCGCAGCGTGCACGCGCACATCCACACGCGCCGCTACGAGTGCTGCGCGTGCGGCCGCCGCATGACCGACAGGGCCTCCATACTCGACCACTACAGTCGCGAGGCCGGTTCTCGTGCACGCTCTGCACCATGTACTTCCCGTCGGCGTACAGCCGCAGCGTGCACGCGCACATCCACACGCGCCGCTACGAGTGCTGCGCGTGCGGCCGCCGCATGACCGACAGGGCCTCCATACTCGACCACTACAGAACACAACACGAAGGCCTGGTGTCCCACTTCACGTGTCATCTTTGCGGGAAAGTTTCTAATAACAGTAAGACACACCGCGGGCACATGAGGAACCACCACAGCGGGCAGCGGCCGGCGTGCGAGCAGTGCGGCAAGACGTTCGTCAACAAGGACTCGCTGGAGGAGCACCGACAGATTCACCAAGGCATAAAGAACTACTCGTGCTCGGAGTGCGGCAAGCGGTTCCGAACGCGAACGCAGATCAAGCATCATCAGCTCAAACACACCGACGTGAAGGAGTACTACTGCGTCGAGTGCGACGTCAGATTCAAATCAGCACATAGTTTGCGTCAGCACTTGGTGAAGAGTTTGAAACATAAGGACAAACAAAGTTTGAAGTTCGCGTGCGCGCGCTGCGACAAGCGGTTCTCGTGCCCTGCCGCGCTGGCGCGCCACGCGGGCGTGCAGCACGACGGCCTGCGCGCGCACGCGTGCGGCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCCGCCACGTCCACCAGGGCGCGCGGCCCGCCAAGCGCCACGTGTGCCACGCGTGCGGCAAGGCCTTCCGGGTGAGGGACTACACACTATACACACAGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCCGCCACGTCCACCAGGGCGCGCGGCCCGCCAAGCGCCACGTGTGCCACGCGTGCGGCAAGGCCTTCCGGGTGAGGGACTACACACTATACACACAGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCCGCCACGTCCACCAGGGCGCGCGGCCCGCCAAGCGCCACGTGTGCCACGCGTGCGGCAAGGCCTTCCGGGTGAGGGACTACACACTATACACACAGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCCGCCACGTCCACCAGGGCGCGCGGCCCGCCAAGCGCCACGTGTGCCACGCGTGC
Protein Sequence: MEEYTSKIEYEFKPDPEPEKTICRCCLTTEKRMFSISLFVSHYWDLAGLNVSESDGLPPWLCHECAGLLRKAVQFKQKLLKANSMLCDYLMRCAPFPIDADPELCKYATPNLRETTTLAFDNTGKKLGFYETLEHEKQLVDSALDTIELPARAEAAGALKLEVDSFSDYEDNITLEEFRLTVPKTENDIPDESPVKLEDSKKKKKTKKKEPPKAKRKKTKEPAEGEEPKTSIRKTVELDPTKIRVVMLNPEEQFKQSEEESKAKFPYQCHLCYKGFNFDTKLENHMRKHSPSRGRFSCTLCTMYFPSAYSRSVHAHIHTRRYECCACGRRMTDRASILDHYRYLNTGVSVRMFAVARPVLVHALHHVLPVGVQPQRARAHPHAPLRVLRVRPPHDRQGLHTRPLQSRGRFSCTLCTMYFPSAYSRSVHAHIHTRRYECCACGRRMTDRASILDHYRTQHEGLVSHFTCHLCGKVSNNSKTHRGHMRNHHSGQRPACEQCGKTFVNKDSLEEHRQIHQGIKNYSCSECGKRFRTRTQIKHHQLKHTDVKEYYCVECDVRFKSAHSLRQHLVKSLKHKDKQSLKFACARCDKRFSCPAALARHAGVQHDGLRAHACGACPAALASRASLAKHRRHVHQGARPAKRHVCHACGKAFRVRDYTLYTQLASRASLAKHRRHVHQGARPAKRHVCHACGKAFRVRDYTLYTQLASRASLAKHRRHVHQGARPAKRHVCHACGKAFRVRDYTLYTQLASRASLAKHRRHVHQGARPAKRHVCHAC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -