Enis016570.3
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000073.1:636790-655395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.28 19 6.4 0.1 2 19 90 107 89 107 0.97 2 19 2.5 1.7e+02 3.4 0.2 2 23 116 137 115 140 0.68 3 19 2.5 1.7e+02 3.4 0.2 2 23 160 181 159 184 0.68 4 19 2.5 1.7e+02 3.4 0.2 2 23 204 225 203 228 0.68 5 19 2.5 1.7e+02 3.4 0.2 2 23 248 269 247 272 0.68 6 19 2.5 1.7e+02 3.4 0.2 2 23 292 313 291 316 0.68 7 19 2.5 1.7e+02 3.4 0.2 2 23 336 357 335 360 0.68 8 19 2.5 1.7e+02 3.4 0.2 2 23 380 401 379 404 0.68 9 19 2.5 1.7e+02 3.4 0.2 2 23 424 445 423 448 0.68 10 19 2.5 1.7e+02 3.4 0.2 2 23 468 489 467 492 0.68 11 19 2.5 1.7e+02 3.4 0.2 2 23 512 533 511 536 0.68 12 19 0.0079 0.54 11.3 0.8 1 23 537 560 537 560 0.95 13 19 0.12 8.2 7.6 3.2 1 23 563 585 563 586 0.94 14 19 0.0015 0.1 13.6 0.5 2 23 590 612 589 612 0.95 15 19 0.0073 0.5 11.4 0.2 3 20 620 637 619 639 0.93 16 19 6.6e-06 0.00045 21.0 0.5 2 23 692 714 691 714 0.95 17 19 0.24 17 6.6 4.8 1 23 720 743 720 743 0.93 18 19 3.7e-05 0.0025 18.6 0.2 3 23 754 774 753 774 0.98 19 19 0.023 1.6 9.8 0.0 1 23 780 803 780 803 0.92
Sequence Information
- Coding Sequence
- ATGTATGGTGTAAAAAGGGATACTGGAGAGGTTTTATGCCACGGATGCCTCAGTGCAGACCGGAGCCTCACTTTCCTGAAGAATTATGAACTCTTCTTCACGCTTTTAGGAAACAAACACTCGCTAGAGGAATACAAATATCTCAATATCTTGTTATGCTGGGAATGCCATGCCCTGCTGCGGCGCACGCAGGCCTTCCGCCAGCGCTTGCAGCGCGCGCAACTCGCACTGACACTGGCTCACGCCCAACGGCGCGTCACAACAGGCAAGTGCCCCCAATGCTCCTCCCCTTACAAAACGCAATGGGAGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTTCCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGCTGGAGCTGCACTGCTGGCGCTCGCACGCGGCGTGGCGCTGCGCGTTGTGCGGCGCGCTGGTGGGTCAGGCGCGCGACCGGCGCCGGCACCTGCTGCGGCACCGCCGCCGGTACCGCTGCCGGGACTGCGGGGTGGGGTTCGATAACAAGCAGCTGTTCTTGTATCACGAGAAGCAGCTGCACTCAAAGTACATTTGCGACCACTGCGGGCACGACTCCGCCGCCAAGAAGACTCTGGAGAAACATGTTGTTCGTCACCACCTCCCCAACAAATGCTCCGTTTGCAACCTTCTCTTCCCGACTTGGGATAGGCTTCGGCGCCACACTCGCGACGTCCACGCGCGCTCCGGCCCCGCCTACTGCGTGGAGTGTGACGTGACCTTTGCTACCAGGGCTAAATACAAACGGCACCTCAGCCAGGCGCAGAGGCATCGGCCTAGGAAGAAAATCAGGGCTAAATACAAACGGCACCTCAGCCAGGCGCAGAGGCATCGGCCTAGGAAGAAAATCAGGGCTAAATACAAACGGCACCTCAGCCAGGCGCAGAGGCATCGGCCTAGGAAGAAAATCAGCGTGCCTTGTCCCGAGTGCGGCAAGGTGTTCTCGCGACGGAACTACATGAACAACCACAGGAAGCTGTTCCATTCCAACCAATCGCGCCATCACTGCCAGCTCTGTGATAAGTACTTCGTCACGGGGTTCTCTCTGCGCTCACACAACAAGTACGTGCACGAGAAGATACCGATGCCCAAAACCAAGATCTGCAGCGTCTGCGGTCGCGGGTTTGGGACGAATCGCGTGCTCGAGAATCACATGCGCACGCACACGGGCGAGCGGCCCTTCGCGTGCGCGCACTGCGCCGCCGCCTTCGCGCAGCGCGTCGCGCTCAAGGCGCACCTCGCCGCCATACACAAGGAGAAGTGA
- Protein Sequence
- MYGVKRDTGEVLCHGCLSADRSLTFLKNYELFFTLLGNKHSLEEYKYLNILLCWECHALLRRTQAFRQRLQRAQLALTLAHAQRRVTTGKCPQCSSPYKTQWELELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRFRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGLELHCWRSHAAWRCALCGALVGQARDRRRHLLRHRRRYRCRDCGVGFDNKQLFLYHEKQLHSKYICDHCGHDSAAKKTLEKHVVRHHLPNKCSVCNLLFPTWDRLRRHTRDVHARSGPAYCVECDVTFATRAKYKRHLSQAQRHRPRKKIRAKYKRHLSQAQRHRPRKKIRAKYKRHLSQAQRHRPRKKISVPCPECGKVFSRRNYMNNHRKLFHSNQSRHHCQLCDKYFVTGFSLRSHNKYVHEKIPMPKTKICSVCGRGFGTNRVLENHMRTHTGERPFACAHCAAAFAQRVALKAHLAAIHKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -