Enis022921.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000169.1:427757-430971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.076 14.0 3.2 1 23 238 260 238 260 0.98 2 12 0.97 66 4.7 0.2 5 14 380 389 378 393 0.86 3 12 5.9e-06 0.00041 21.1 1.3 1 23 407 430 407 430 0.97 4 12 0.00014 0.0097 16.8 0.5 1 23 435 457 435 457 0.98 5 12 0.0016 0.11 13.5 2.0 2 23 479 501 478 501 0.94 6 12 0.0071 0.48 11.4 1.9 1 23 505 528 505 528 0.97 7 12 0.14 9.4 7.4 0.3 2 23 551 573 550 573 0.93 8 12 5.8e-06 0.0004 21.2 2.9 1 23 583 605 583 606 0.96 9 12 0.0041 0.28 12.2 1.4 2 23 622 643 621 643 0.96 10 12 0.0093 0.64 11.1 0.6 1 23 649 671 649 671 0.96 11 12 0.81 55 5.0 2.5 1 20 677 696 677 701 0.91 12 12 0.0026 0.18 12.8 0.2 2 23 747 768 747 768 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTAGAAAATACCCTCCAAACCGATTCAAACTACCAATTAACAGATAGCGTAACTATAAAAGAGGAGTTAGACAATAACATAGTAATAGAAGAACACAATGTAGAATTACAATTAAAAACTGAGACAGAAGAACCTTACCAGCACCAAGAAGTGAAAGAAGAATTGGAACCAGTGAATTTCAGGAAATACATAGAGAATAAGATATTAGAAGAATTTAAAGTACAAAGCGAAGTTGATTCAATATTGCCTATACTAGAGCCAGAGGAAGAGTCCAATGTAAAGCAGGAGTGTTTGGAGGATGATGCCATGATTTCATATGACTTCCCGAGCTTTGATGATGGGAGTGTGGGGACGCAGAGCATGGAGACGGGCAGTATGGACAGCAACGATGTGGAGGCGCTCGGGAATGTGGAGACTTGCCTGCAGGAGGATAGTGTCAGTGTCAAATATGAGAATGATGAATATGATGATGGACTCATCGAATCGCAAACCACCAAAACACTAGTCATGGAAATTCATCCCATGTCACACACTGGCAATGTTCCCTTGTCTAAAATAGGTAACCCGGAGGAAATTCTTCCCACCAATGAGGATTATGAAGACTTTCAATTAAATTCTATCACGGGAAACGAATTATCATTGGAACAGGAGGCCTATGGACTTTTAAAAGCAAAAAAAAGAAGAACTGCCGATGTAGAAAAGTCCCACCAATGCCCTAAATGCGTAAACACCTACAGAAGCGCTCATACTCTTCAAAAGCATTTATTAGTGCATGCCAGCATAGAGAACCGTGCTAAAGGCATCATACAGGGGCAGAAGACTCGGCGCCTGAATAAACTGAAAGCGGAGAGGCAATACCGTATAGAATTGAAGAAAATGGAATCTAAGAAAATACAATCAAAGAAAATAGAATCAAAGAAAATTGAGTCGAAGAAAATAGAATCAAAGAAAATAGAATTGAAGAAAATAGAATCAAAGAAAATTGAATTGAAGAAAATAGAATCAAAGAAAATTGAATTGAAGAAAATAGAATCAAAGAAAATTGAATTGAAGAAAATAGAACCAAAGAAGGAAAAAAAGAAAATTAAGAAAAAACCTGTTGAAATTGTTAAGAAGGAAGGCTATGAATGCACTTGTGGAAAGGTGTTCAGAAGGAGAAGCCGCATGGAAACGTGTCTAAGGTCACACAACTTGTTCGCTGAAGTAAAAACCTACCCCTGCCCAACATGCACGAAAAGTTTTAAAGACAAAACTGAGCTAGCATTACATAGAAAACGATTCCATATCAAAAAGAAATTCCCTTGTAAGTTTTGCCCCACAGACTACAACACCCCTAAAGAGCTCTTTAGGCATTTACAGATACACCAAAAAGTTCAACTTATGGAGTACAAGGTTATATCTGAAATCATGAAAGGTAAAAAGAAGATGCGGTGTTTCATGTGCTCTAAAACTTGTACGGATCTTTCAGACTTAAAGTCGCATGTTATGGAAGACCATAAAGAGCCGTACATCTGTCAGCATTGTCAGCAAACGTTCCCTAAAATAATCGACTTCGCTAATCACACGAAAACATCGCATCCTGAGGTCGAAGGGCAATCGGTCTTGGACGTCCTAGAGGCGTTTTCAAAACTAGTACAAGCATGGAAATGCGAAGAATGTGAACTCCAATTCCACGAAGCGGATAAGCTAGCCATGCATCAGATAGAAAAGCACAGTCGCGAAGTGAAATCAGAGCTGCAATTCCAATGCAATGATTGCCGAAGAGTTTTCATCACACAGAAAGGTTTGACATCACATAGGAGAGTGCATCACAGTACGGAGCAACCCGAAGTAAACGATGCCGTAGAGCAGGGCATAATGTGTTTAGAATGCAGGAAAATATGCAAGGACATGAACGCCTTAACGTCACACATGAGGCTACATTCCCCTGAGCGGAGATATCCGTGCAAATTCTGCGATTTCCGCTTCGCGACGCCTGAAAAGCGGAAATCGCATGCGGAAATACACACAGGCGATATGAGGTACGTCTGTTTCATCTGCGAGTATCAGTGCACGTCGGAAAATAGGCTTAAGCAGCACAAAGTGTCAGTGAAGCATTCGAACATGAAGGAATATCTTCTGACGGGTAAGATCGACAACGAATCTACTTCTCAACAGGAGAAGATCAAAGCGTCTCAAAGTAAAAGTGTTAAGAAAAAGAAGAAAGAGGTATCTAGTCCGGATATTGAAGCTACTTGTGAGGTCTGCGGTGAAAAGTTTCCCAGTGAAGAGACTATGTTGGAGCACAAACAGACTCACCCGTTCATAGAGTTCCCTAACGAGGATACGCCTAGTAGGATATTCTTTAAGTAG
- Protein Sequence
- MALENTLQTDSNYQLTDSVTIKEELDNNIVIEEHNVELQLKTETEEPYQHQEVKEELEPVNFRKYIENKILEEFKVQSEVDSILPILEPEEESNVKQECLEDDAMISYDFPSFDDGSVGTQSMETGSMDSNDVEALGNVETCLQEDSVSVKYENDEYDDGLIESQTTKTLVMEIHPMSHTGNVPLSKIGNPEEILPTNEDYEDFQLNSITGNELSLEQEAYGLLKAKKRRTADVEKSHQCPKCVNTYRSAHTLQKHLLVHASIENRAKGIIQGQKTRRLNKLKAERQYRIELKKMESKKIQSKKIESKKIESKKIESKKIELKKIESKKIELKKIESKKIELKKIESKKIELKKIEPKKEKKKIKKKPVEIVKKEGYECTCGKVFRRRSRMETCLRSHNLFAEVKTYPCPTCTKSFKDKTELALHRKRFHIKKKFPCKFCPTDYNTPKELFRHLQIHQKVQLMEYKVISEIMKGKKKMRCFMCSKTCTDLSDLKSHVMEDHKEPYICQHCQQTFPKIIDFANHTKTSHPEVEGQSVLDVLEAFSKLVQAWKCEECELQFHEADKLAMHQIEKHSREVKSELQFQCNDCRRVFITQKGLTSHRRVHHSTEQPEVNDAVEQGIMCLECRKICKDMNALTSHMRLHSPERRYPCKFCDFRFATPEKRKSHAEIHTGDMRYVCFICEYQCTSENRLKQHKVSVKHSNMKEYLLTGKIDNESTSQQEKIKASQSKSVKKKKKEVSSPDIEATCEVCGEKFPSEETMLEHKQTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289988;
- 90% Identity
- -
- 80% Identity
- -