Basic Information

Insect: Epinotia nisella
Gene Symbol: -
Assembly: GCA_932294385.1
Location: CAKOAM010000119.1:815469-827859[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.6 3.2e+02 2.6 0.0 2 13 7 18 6 21 0.84

2 15 0.24 17 6.6 0.0 2 19 28 45 27 47 0.93

3 15 0.043 2.9 9.0 0.0 2 23 57 79 57 79 0.93

4 15 1e-06 7e-05 23.5 0.4 1 23 84 107 84 107 0.95

5 15 0.83 57 4.9 0.2 3 20 136 152 135 153 0.77

6 15 0.83 57 4.9 0.2 3 20 166 182 165 183 0.77

7 15 0.72 49 5.1 0.2 3 16 256 268 255 273 0.73

8 15 0.83 57 4.9 0.2 3 20 286 302 285 303 0.77

9 15 0.83 57 4.9 0.2 3 20 316 332 315 333 0.77

10 15 0.83 57 4.9 0.2 3 20 346 362 345 363 0.77

11 15 0.83 57 4.9 0.2 3 20 376 392 375 393 0.77

12 15 9.5e-05 0.0065 17.3 0.2 1 23 404 426 404 426 0.98

13 15 3.3e-05 0.0022 18.8 0.1 1 23 432 454 432 454 0.94

14 15 0.014 0.96 10.5 2.1 2 23 461 482 460 482 0.96

15 15 5.5e-05 0.0037 18.1 3.3 1 21 488 508 488 511 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.6	3.2e+02	2.6	0.0	2	13	7	18	6	21	0.84
2	15	0.24	17	6.6	0.0	2	19	28	45	27	47	0.93
3	15	0.043	2.9	9.0	0.0	2	23	57	79	57	79	0.93
4	15	1e-06	7e-05	23.5	0.4	1	23	84	107	84	107	0.95
5	15	0.83	57	4.9	0.2	3	20	136	152	135	153	0.77
6	15	0.83	57	4.9	0.2	3	20	166	182	165	183	0.77
7	15	0.72	49	5.1	0.2	3	16	256	268	255	273	0.73
8	15	0.83	57	4.9	0.2	3	20	286	302	285	303	0.77
9	15	0.83	57	4.9	0.2	3	20	316	332	315	333	0.77
10	15	0.83	57	4.9	0.2	3	20	346	362	345	363	0.77
11	15	0.83	57	4.9	0.2	3	20	376	392	375	393	0.77
12	15	9.5e-05	0.0065	17.3	0.2	1	23	404	426	404	426	0.98
13	15	3.3e-05	0.0022	18.8	0.1	1	23	432	454	432	454	0.94
14	15	0.014	0.96	10.5	2.1	2	23	461	482	460	482	0.96
15	15	5.5e-05	0.0037	18.1	3.3	1	21	488	508	488	511	0.94

Sequence Information

Coding Sequence: ATGCCAATCCCCGAGCTGAAGTGTTCCGTGTGCAACGTGCAGTTCGAGAACCTGGACGCCGTGATGCCAATCCCCGAGCTGAAGTGTTCCGTGTGCAACGTGCAGTTCGAGAACCTGGACGCCGTGGTGCGTCACGCGGCGGCGGGGGGGTGCGACCCCAAACTAAGGTCCTGTCCTCAGTGCGGCGAGACTTTTCTTATAGAAGAGCAGCTTGAAACACACTTGGAGAGCGCGCACATCAAGCAAGTCTACAAGTGTGACGACTGTGACAAATCGTTCGCCACCAAGTCCTCCCTGGGCACGCACGTCGACCGCGTCCACCTCAAGATCAAACCGAAGAAGACCGGCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCCGCGGCAAGGGCTACCCGCAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCCGCGGCAAGGGCTACCCGCAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGCAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCTAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGTGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTCAAACGCGTCGAGGAGATCTGCGAGATCTGCGGCAAGGGCTACCCGAAGACCTTCTACAAGTACCACATGTACCCCAAGAAGATGCAAGTTAAACGCGTCGAGTATATCTGCGAGAGCTGCGGCATGGGGTACCCGAGCTCGACCTGGCTGAAGTACCACCAGCGGACTCACACCGGCGAGCGGCCATATAAATGCCCGGAGTGCCCGAAGAGCTACATGACTCCGGCCGCCCTACAGAGCCACTCTGTGTCCCACACGGGGGTGCGCCGCTGGCAGTGCTCGCAGTGCCCCAAGACCTTCCTGCATCAGTCGTCCATCTATAAGCACAAACTGGTGCACACTGGTGAGAAACCATTCACCTGTCATATCTGCAGTAAAACATTCACGCAGTCGGGCTCGCTCGCCACCCACGTCAAGTGCGTGCACATGAAGCTGAAGCCGCCGCCGCGCCGCCGACACCAGCCGACCTAG
Protein Sequence: MPIPELKCSVCNVQFENLDAVMPIPELKCSVCNVQFENLDAVVRHAAAGGCDPKLRSCPQCGETFLIEEQLETHLESAHIKQVYKCDDCDKSFATKSSLGTHVDRVHLKIKPKKTGFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEEICEIRGKGYPQTFYKYHMYPKKMQVKRVEEICEIRGKGYPQTFYKYHMYPKKMQVKRVEEICEICGKGYPQTFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEEICEICGKGYPKTFYKYHMYPKKMQVKRVEYICESCGMGYPSSTWLKYHQRTHTGERPYKCPECPKSYMTPAALQSHSVSHTGVRRWQCSQCPKTFLHQSSIYKHKLVHTGEKPFTCHICSKTFTQSGSLATHVKCVHMKLKPPPRRRHQPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -