Enis020341.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000119.1:63420-80870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0031 0.21 12.6 2.3 1 23 23 46 23 46 0.96 2 21 0.0023 0.16 13.0 0.9 1 23 50 73 50 73 0.95 3 21 0.016 1.1 10.3 0.0 3 20 85 102 84 104 0.94 4 21 0.00066 0.045 14.7 0.1 3 23 117 137 116 137 0.96 5 21 0.00055 0.038 14.9 1.6 2 23 144 166 143 166 0.96 6 21 8.7 5.9e+02 1.7 8.6 4 23 187 210 181 210 0.85 7 21 2.3 1.6e+02 3.5 0.6 2 11 226 235 225 239 0.86 8 21 0.75 51 5.1 0.3 5 20 245 260 244 261 0.92 9 21 0.078 5.4 8.2 0.9 5 23 269 288 268 288 0.95 10 21 8.7 5.9e+02 1.7 8.6 4 23 309 332 303 332 0.85 11 21 0.078 5.4 8.2 0.9 5 23 419 438 418 438 0.95 12 21 2.3 1.6e+02 3.5 0.6 2 11 454 463 453 467 0.86 13 21 1.2 83 4.4 0.1 5 20 473 488 472 489 0.92 14 21 0.078 5.4 8.2 0.9 5 23 497 516 496 516 0.95 15 21 2.3 1.6e+02 3.5 0.6 2 11 532 541 531 545 0.86 16 21 0.68 46 5.2 0.2 5 21 551 567 550 568 0.91 17 21 0.43 29 5.8 0.3 5 21 622 638 621 639 0.92 18 21 5.3 3.6e+02 2.4 0.1 11 23 662 674 659 674 0.89 19 21 8.8e-06 0.0006 20.6 0.2 1 23 680 702 680 702 0.98 20 21 5.3e-05 0.0036 18.1 2.2 1 23 708 730 708 730 0.94 21 21 1.2e-06 8.4e-05 23.3 1.4 1 23 736 759 736 759 0.97
Sequence Information
- Coding Sequence
- ATGTTGAATGAATCCGATTTCAGCCACAGAGCGAAGGAGCACAGCCGGTGGCATCGGGGTTACACTTACACCTGCAAAATCTGCGGCGCTACATTCACTAAATCGACGAGCCACCTGACGCACATTCGCCTGCAGCACCCGTCCGAGCACTGCTGCGAGCTGTGCGGGGAGGCCTTCATCGGCCAGTACGGCCTGGCCATGCACCGGAAGAAGGCCCACAGAGACCAGGGTGCAGTGAAACCGGAGTCTCTCTGTGTGCTGTGCGGAATCCAGTTTCGGAGTGTGGACGCTCTGAACAGACATATCAGCGCCGTTGAGGACAACTCCTGTAACACTGGCCTTAGGCCATGTCTCAGTTGCGGCGAGGGGTTTTCCACGGAAGAAACGTTGAAGGAGCATTTGAAAATACACGTCTCAGATGACTGCGTGAAATGTCAAGAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGCGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGTGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCGTCAGTATCTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGTGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGCGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCGTCAGTATCTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGCGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCGTCAGTATCTACACTCAAACTTTATTGCAGTGCGACTGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGCGTGCACGCGCGCGCGGCGGGCGCGGCGCGGCGCGCGCGCGGCGAGCGCGTCGTGTGCGAGGTGTGCGGCAAGAGGTGCACCGTCAGTATCTACACTCAAACTTTATTGCAGTGCGACTGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCCCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCTCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCTCACGAGAAGTCGTTCGCGCTGCACCGGCAGCGTACACTCAAACTTTATTGCAGTGCGACCGGTCGTTCGCTCACGAGAAGTCGTTCGCGCTGCACCGGCAGCTCGAACGCCACGCTGGTCTACCACCAGCGGACGCACACCGGCGAGAAACCCTACCCGTGCAACAGCTGCCCCAAGCGGTTCAGCGTCGCGCAGCTGCTGCAGATCCACCTGCGTACACACACGGGAGAGCGACCGTTCAAGTGTTCCCGCTGCCCGAAGGCCTTCAAGCACAAGGCGGCGCTCAACCGCCACGACCGGGTGCATACGGGGGCGAAGCCCTACGCCTGTCCCCACTGCGGCAAGTCCTTCTCGCAATCCAACTCGATGAAGACCCACGTCAGCACCGTGCACCTCAAGCTACCGGCGCGCTACCGCCGGCGGAACAAGACGGAATAA
- Protein Sequence
- MLNESDFSHRAKEHSRWHRGYTYTCKICGATFTKSTSHLTHIRLQHPSEHCCELCGEAFIGQYGLAMHRKKAHRDQGAVKPESLCVLCGIQFRSVDALNRHISAVEDNSCNTGLRPCLSCGEGFSTEETLKEHLKIHVSDDCVKCQECDRSFAHEKSFALHRQRVHARAAGAARRARGERVVCEVCGKRCTCDRSFAHEKSFALHRQRVHARAAGAARRARGERVVCEVCGKRCTVSIYTQTLLQCDRSFAHEKSFALHRQPYTQTLLQCDRSFAHEKSFALHRQRVHARAAGAARRARGERVVCEVCGKRCTCDRSFAHEKSFALHRQRVHARAAGAARRARRGARAASASCARCAARGAPSVSTLKLYCSATGRSPTRSRSRCTGSVHSNFIAVRPVVRPREVVRAAPAAYTQTLLQCDRSFAHEKSFALHRQRVHARAAGAARRARGERVVCEVCGKRCTVSIYTQTLLQCDWSFAHEKSFALHRQPYTQTLLQCDRSFAHEKSFALHRQRVHARAAGAARRARGERVVCEVCGKRCTVSIYTQTLLQCDWSFAHEKSFALHRQRTLKLYCSATGRSPTRSRSRCTGSVHSNFIAVRPVVRSREVVRAAPAAYTQTLLQCDRSFAHEKSFALHRQRTLKLYCSATGRSLTRSRSRCTGSSNATLVYHQRTHTGEKPYPCNSCPKRFSVAQLLQIHLRTHTGERPFKCSRCPKAFKHKAALNRHDRVHTGAKPYACPHCGKSFSQSNSMKTHVSTVHLKLPARYRRRNKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -