Enis020370.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000119.1:390470-400894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.044 3 8.9 0.1 3 23 20 41 19 41 0.94 2 32 0.0055 0.38 11.8 0.4 2 23 47 69 46 69 0.95 3 32 2.3 1.6e+02 3.5 0.6 2 15 92 105 91 108 0.83 4 32 2.3 1.6e+02 3.5 0.6 2 15 115 128 114 131 0.83 5 32 2.3 1.6e+02 3.5 0.6 2 15 138 151 137 154 0.83 6 32 2.3 1.6e+02 3.5 0.6 2 15 161 174 160 177 0.83 7 32 2.3 1.6e+02 3.5 0.6 2 15 184 197 183 200 0.83 8 32 2.3 1.6e+02 3.5 0.6 2 15 207 220 206 223 0.83 9 32 2.3 1.6e+02 3.5 0.6 2 15 230 243 229 246 0.83 10 32 2.3 1.6e+02 3.5 0.6 2 15 253 266 252 269 0.83 11 32 4.6 3.2e+02 2.6 0.8 2 12 276 286 275 288 0.88 12 32 3.1 2.1e+02 3.1 0.6 2 12 304 314 303 321 0.90 13 32 3.8 2.6e+02 2.9 0.6 2 12 332 342 331 349 0.89 14 32 3.8 2.6e+02 2.9 0.6 2 12 360 370 359 377 0.89 15 32 2.3 1.6e+02 3.5 0.6 2 15 388 401 387 404 0.83 16 32 2.3 1.6e+02 3.5 0.6 2 15 411 424 410 427 0.83 17 32 3.8 2.6e+02 2.9 0.6 2 12 434 444 433 451 0.89 18 32 2.3 1.6e+02 3.5 0.6 2 15 462 475 461 478 0.83 19 32 2.3 1.6e+02 3.5 0.6 2 15 485 498 484 501 0.83 20 32 2.3 1.6e+02 3.5 0.6 2 15 508 521 507 524 0.83 21 32 0.003 0.21 12.6 3.0 2 23 531 552 530 552 0.97 22 32 0.044 3 8.9 2.6 3 23 560 580 559 580 0.99 23 32 1.1e-05 0.00078 20.2 2.6 1 20 586 605 586 606 0.96 24 32 0.022 1.5 9.9 3.5 5 20 622 637 621 644 0.93 25 32 8e-06 0.00054 20.7 1.8 1 19 650 668 650 670 0.96 26 32 0.00022 0.015 16.2 6.8 1 20 682 701 682 708 0.96 27 32 0.00022 0.015 16.2 6.8 1 20 714 733 714 740 0.96 28 32 2.6e-05 0.0018 19.1 6.4 1 20 746 765 746 772 0.96 29 32 0.00022 0.015 16.2 6.8 1 20 778 797 778 804 0.96 30 32 0.00022 0.015 16.2 6.8 1 20 810 829 810 836 0.96 31 32 5.2e-06 0.00036 21.3 1.6 1 20 842 861 842 862 0.96 32 32 4.9e-05 0.0033 18.3 0.6 1 23 866 889 866 889 0.95
Sequence Information
- Coding Sequence
- ATGGCGCGACACACGTTCGCGGCTCTCAACAACGTCTGCAACCCTAGTATGAGGGCATGCACGCTGTGCGGAGAAAACCTGGCGACCGAAGAACTACTGAAGAACCATACGCAGGAACGACATGGCAAACCGGAAACCAAGTGTGACGAGTGCAACAAAACATTCCTCACCGAGGCGTCCCTTAGCGTGCATTATGAACGAGTACATCTCCAAGTGAAGAGTGTCCGCCGGAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAGTGTCCGCCGGGAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAATGTCCGCCGGAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAGTGTCCGCCGGAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAGTGTCCGCCGGAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAGTGTCCGCCGGAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGGGGGCCCACCACGCGCGCAAGCAGTACGGCGGGGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGCAAGAACAGCACCATCCTGAAGTACCACCAGCGCACGCACACCGGCGAAAAACCGCACGGTTGTCCGCGATGTCCAAAGCGGTTCGTCTCCCCAATGCTGCTGCACTGTCACCTCCGCTCGCACACCGGCGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTGACTGTACACAAGACGTGTTACCTCCGCTCGCACACCGGCGAGCGCCCCTACAAGTACACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACAAGACGTGTCACCTCCGCTCGCACACCGACGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACGAGACGTGTCACCTCCGCTCGCACACCGGCGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACAAGACGTGTCACCTCCGCTCGCACACCGGCGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACAAGACGTGTCACCTCCGCTCGCACACCGACGAGCGCTCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACATGACGTGTCACCTCCGCTCGCACACCGACGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTACACAAGACGTGTCACCTCCGCTCGCACACCGACGAGCGCCCCTACAAGTGCACGCAGTGCCACAAATCCTTCACACAGAAGTCCGCGCTCACTGTACACAAGACGTGTCACCTCCGCTCGCACACCGGCGAGCGCCCCTACAAGTGCACGCAGTGCCACAAGTCCTTCACACAGAAGTCCGCGCTCACTGTCCACACTGGTGAGAAGCCGTTCGCGTGTTCCATATGCGGCAAATCGTTCACTCAGGCCGCCTCCGTGCACACACACGTCAAGTACGTTCACATGAAGATGCCCGCGCCGCCGCGACGGAGGAACCTCAAGCAATAG
- Protein Sequence
- MARHTFAALNNVCNPSMRACTLCGENLATEELLKNHTQERHGKPETKCDECNKTFLTEASLSVHYERVHLQVKSVRRKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKSVRREGAHHARKQYGGVVMCELCGKRCKNVRRKGAHHARKQYGGVVMCELCGKRCKSVRRKGAHHARKQYGGVVMCELCGKRCKSVRRKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKSVRRKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKGAHHARKQYGGVVMCELCGKRCKNSTILKYHQRTHTGEKPHGCPRCPKRFVSPMLLHCHLRSHTGERPYKCTQCHKSFTQKSALTVHKTCYLRSHTGERPYKYTQCHKSFTQKSALTVHKTCHLRSHTDERPYKCTQCHKSFTQKSALTVHETCHLRSHTGERPYKCTQCHKSFTQKSALTVHKTCHLRSHTGERPYKCTQCHKSFTQKSALTVHKTCHLRSHTDERSYKCTQCHKSFTQKSALTVHMTCHLRSHTDERPYKCTQCHKSFTQKSALTVHKTCHLRSHTDERPYKCTQCHKSFTQKSALTVHKTCHLRSHTGERPYKCTQCHKSFTQKSALTVHTGEKPFACSICGKSFTQAASVHTHVKYVHMKMPAPPRRRNLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -