Enis021683.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia nisella
Gene Symbol
-
Assembly
GCA_932294385.1
Location
CAKOAM010000139.1:1559528-1582064[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.011 0.73 10.9 1.6 1 23 179 201 179 201 0.99
2 16 0.001 0.071 14.1 2.5 1 23 208 231 208 231 0.96
3 16 0.0028 0.19 12.7 1.2 1 21 339 359 339 360 0.96
4 16 0.001 0.071 14.1 2.5 1 23 365 388 365 388 0.96
5 16 0.0028 0.19 12.7 1.2 1 21 496 516 496 517 0.96
6 16 0.0028 0.19 12.7 1.2 1 21 522 542 522 543 0.96
7 16 0.001 0.071 14.1 2.5 1 23 548 571 548 571 0.96
8 16 0.0012 0.085 13.8 7.0 1 23 602 625 602 625 0.98
9 16 0.0013 0.089 13.8 0.6 2 23 633 655 632 655 0.94
10 16 7.2 4.9e+02 2.0 0.0 5 17 670 682 669 683 0.86
11 16 0.68 47 5.2 0.4 3 20 725 742 723 744 0.91
12 16 0.00012 0.008 17.1 0.7 1 23 783 806 783 806 0.96
13 16 7.5e-05 0.0051 17.7 0.1 1 23 835 858 835 858 0.96
14 16 0.00046 0.031 15.2 0.2 1 20 864 883 864 884 0.97
15 16 0.00087 0.059 14.3 0.6 2 23 894 915 893 915 0.96
16 16 0.0011 0.077 14.0 0.1 3 23 923 944 921 944 0.95

Sequence Information

Coding Sequence
ATGTCCTCGGCATTAATCGAGGGTGTAGTAAAAGTAGAGGTGAATCCTGAGCCTTCGCTCGCCTGCAGGATCTGTCTGGCGTGGGATGTGAAACTGTGCAACATTCATGAATGGGGACTGGGGGACATGTTCACGGAGATCACGGGGACAACGTTGTCAGCATGGGACGGGTTCCCGCAGCACCTGTGCGCGTGGTGCCGCGCGCAGCTGGTGAAGGCGCACGCGCTGCGCGCGCGCAGCCGCCGCGCCGACGCGCTGCTCAAGCAGGCGCTCATGCACCAACACTTTGTTATAACAGTGCCAAAGATTGTAATGCAAAGAAGGGGGGAGAATGAGGTGGGCTCCGTGGTGGCTCCGGCGCTGCGGGAAGCGCAGCCCCGCCGCCCTGGCGTAAGAAAGGCCGGCACCGATACCGAGCAAGAAATCAAGGAATATGAGAAGAAACACAATGTGGAACTGAAGTTTTTGACTGAAGAAGATATGGTTCAGGACATGGAAGAAAGGAAAAGGACAGATAATTACATCAGGGCGGCCTACAAGTGTGAACTGTGTTACAAGGGTTACCTTACATCTGTATCATACAATAACCACATGAAGTCTCATGCTTCGGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCCGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGGTCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGCGCGCGGCGAGCACGAATGTTCGCTGTGCCACTGGCGCTACCAGAGCCCCGGGAAGCTGCGCGACCACATGCGCTACGTGCACCGGATCAAGTTCCACTGCACGCTCTGCGGCAAGCTCCTCCCCGGCCCAGAACGCGCCGAGCTTCACGCAGCGTTCCACGCGGGCGCCCATTTCAAGTGCAACTACTGCGAGAAACATTTCCGGAGGAAGACGTCGTGCTGGACGCACATGCGCATCGCGCACACGCACGAGAACTTCGACAGCTCGTGCGAGCTCTGCGGGGAGATCTTCGCCAGCAAGAAGGGGCTCAAGAGCCACAAAACCCGCAGCCACAGGGAGACGCATACGCACGAAAACTTCGACAGCTCGCGCGAGCTCTGCGGGGAGGTGTTCGCCAGCAAGAAGGGGCTGCTAAAGCAGTCTGTAGTTGCGTTCCCTGTGCCCAACCTCTCTAAAGTCGGCACGACGTTTGTGACCTCTCTAGTGTCGCAAGCCATAGGCTACGGTGTCTACTTATCAACGGTGGACAAGAGTCTCTTCTGCCGCAGGTGTAGCCAACAGTTCGACAATATGGACGCTCTACGGAACCACAAAGAGATGCAGCCAGGCCAGCGCTGTCTCAACAACCAGAGTGCGTGTCAGAAATGCGGCGCGTTGTGGCCGAGCCTGGCTGAGCTAATACAGCACAAACATGAAGCTCATGGCGCAGAACTTTTCACATGTGACGAGTGCAACAAGACGTTCCTATCGAAGTCGTCTCTATCCGTCCACATCGACCGATTGCACTTGAACATCAAGGTGAAGCAGCCTAAGGGACAGTACACCAACTATACCCCGATGTTGTCCGACGTCGGCGAGAAGAGGAGGGACTATGTGTGCGAGGAGTGCGGCAAGGCTTATACGCTCCTGGGGCTGCTGAAGCAGCATCAGATGTTGCGGCACACGGCAGACAAACCTTTTAAGTGCGACCAGTGCTCTAGGGGCTTCATCAACGCTACTCAACTTCGGACTCACATCGATTGCATCCATAAGCGGCTACGGAAATGGCGATGCCCGGAGTGCCCTAAAACCTTTCTGCACCAGTCCTCGGTCAACGTTCACAGGCTTATTCACATTGGAAAGAAGACGCAGATATGCACATACTGTGGCAAGGCGTTTTTACAGTCGGGCTCTCTCATCACGCACGTGAAATACGTGCATCTAAAGATCACGCCGCCGCCGCGCAAGAGGAACAAGAAAAACGCCTAA
Protein Sequence
MSSALIEGVVKVEVNPEPSLACRICLAWDVKLCNIHEWGLGDMFTEITGTTLSAWDGFPQHLCAWCRAQLVKAHALRARSRRADALLKQALMHQHFVITVPKIVMQRRGENEVGSVVAPALREAQPRRPGVRKAGTDTEQEIKEYEKKHNVELKFLTEEDMVQDMEERKRTDNYIRAAYKCELCYKGYLTSVSYNNHMKSHASARGEHECSLCHWRYQSPGKLRDHMRYVHRIKFHCTLCGKLLPGPRAASTNVRCATGATRAPGSCATTCATCTGSSSTARSAASSSPARARRARMFAVPLALPEPREAARPHALRAPDQVPLHALRQAPPRPARGEHECSLCHWRYQSPGKLRDHMRYARGEHECSLCHWRYQSPGKLRDHMRYVHRIKFHCTLCGKLLPGPRAASTNVRCATGATRAPGSCATTCATCTGSSSTARSAASSSPARARRARMFAVPLALPEPREAARPHALRAPDQVPLHALRQAPPRPARGEHECSLCHWRYQSPGKLRDHMRYARGEHECSLCHWRYQSPGKLRDHMRYARGEHECSLCHWRYQSPGKLRDHMRYVHRIKFHCTLCGKLLPGPERAELHAAFHAGAHFKCNYCEKHFRRKTSCWTHMRIAHTHENFDSSCELCGEIFASKKGLKSHKTRSHRETHTHENFDSSRELCGEVFASKKGLLKQSVVAFPVPNLSKVGTTFVTSLVSQAIGYGVYLSTVDKSLFCRRCSQQFDNMDALRNHKEMQPGQRCLNNQSACQKCGALWPSLAELIQHKHEAHGAELFTCDECNKTFLSKSSLSVHIDRLHLNIKVKQPKGQYTNYTPMLSDVGEKRRDYVCEECGKAYTLLGLLKQHQMLRHTADKPFKCDQCSRGFINATQLRTHIDCIHKRLRKWRCPECPKTFLHQSSVNVHRLIHIGKKTQICTYCGKAFLQSGSLITHVKYVHLKITPPPRKRNKKNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-