Enis014756.2
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000061.1:1524282-1557178[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.2 4.9e+02 2.0 0.7 3 17 58 72 56 73 0.89 2 13 0.19 13 6.9 0.4 1 23 626 648 626 648 0.96 3 13 9.3e-05 0.0064 17.4 3.8 1 23 661 683 661 683 0.97 4 13 0.021 1.4 9.9 9.3 1 23 689 711 689 711 0.99 5 13 3.2e-05 0.0022 18.8 6.6 1 23 718 740 718 740 0.99 6 13 3e-05 0.0021 18.9 0.2 1 23 746 768 746 768 0.93 7 13 0.043 2.9 9.0 0.0 1 14 774 787 774 798 0.89 8 13 2.4e-06 0.00016 22.4 0.0 1 23 804 826 804 826 0.98 9 13 1.4e-05 0.00098 19.9 1.2 1 23 832 855 832 855 0.95 10 13 0.00014 0.0098 16.8 2.0 1 23 861 884 861 884 0.96 11 13 0.00011 0.0078 17.1 1.1 2 23 891 912 890 912 0.97 12 13 2.5e-05 0.0017 19.1 1.0 1 23 918 940 918 940 0.97 13 13 0.0025 0.17 12.8 0.1 1 23 946 970 946 970 0.94
Sequence Information
- Coding Sequence
- ATGGCGTCGCGGGTGGCGAGCTGCTTCATATGCGGCACGAGCACCGCCACCATCACCATCAGCCTCGTACAGGACACGAGTAATCTTCAATCTGGCAAGAAGCTCCTAGACATCGTGAGCGAGATAGCCGAGAAGCCCTTGAAAGAGGAAGACATACATTCTACAGTTATATGCAAGAAATGCAGTCAAACTTGCAAGGAATACGATGACCTACAAGTTAGGCTAAAGCACATAAAGACGGAGCTCCGCGGCCAGATCCACAAGAGCAGCGAGAGCCCCACGAAGGCCGAGGCCCGCACGCTGGTGCTGCCGGCCTCCAAGCTGCACCCGCTGCCGCCGGACTTCGTGCTCAACGTCGGCCGCCTCGCCGCAGTGCCGCGCAAGACATCCACAACAATCCCATCAAAACTGAGTCTCAAAGTCACCGTCGGCTCATCAGTCCTGACCCAAAGCATCAAGACGACCCCAGCGCTCTCCAAGAACATCGGCATACAGAAGACAGAACCCACCACCAGTGAGAACGACTTGATCTTCGAAGAGGCCAGTTTACCGAAGGACTTTATGAGTTCCATGGTGCTGCAGAGGATAGGACAGCAGGGTGATGTGAACAATGATGACCAGCCTATGGAGATTGATGAAGACTGCTCTTACGCTATAGTTACTCAAGAGGACGGCACAAGTGAAGTAACCAAAAAGAAATCCGGCGACCAATCTAGCGTGTTCGACGTGAGCCTCCTGTCGTCACTCGACGACAGCGGGGACGGCGAGCCGGACGCCGAGCAACGCACCGACCAGTACATCGTCGGGAAACTAGAGATACTGAGCGAGAGAGAGGACGAGGAGGAACAAACACTGTCGGCACTGGACGACAAGAGGGCACTGTCTTCTCTAGTTGACAGAAACACTGTCGGCACTGGACGACAAGGAGACATTGTCGCCTCTAGACGACAAGGAGACACTGTCGTTACTAGACGACTAAGAGACAGCGTCGTCTCTAGACAACACGGAGACACTGTCGTTACTAGACGACCAAGAGACAGCGTCGTCTTTAGACAACAAGGAGACACGGAGAAATTGACGTTACTAGACGACCAAGAGACACCGTCGTCTCTAGACAACACGGAGACACTGTCACAACACGGAGACACTGTCGTTACTAGACGACCAAGAGACACCGTCGTCTCTAGACAACACGGAGACACTGTCGTTACTAGACGACCAAGAGACAGCGTCGTCTCTAGACAACAAGGAGACACGGAGAAATTGACGTTACTAGACGACCAAGAGACACCGTCGTCTCTAGACAACACGGAGACACTGTCGTTACTAGACGACCAAGAGACAGCGTCGTCTCTAGACAAACGACAAGGAGACACGGAGACACCGTCATCTCTAGAAACCAAGGAGACACCGTCGTTACTAGACGACAAAGAAACAATAGTGATGTCGAGCGACAACTCTATCCTCCGAGTGGTGTCTGGTCAGCAGCTGGTGTATGGAGAGTCTCTTGAACTGCTCAACGAGGACGATGACACACAGCCAGACAGCCAAGACGACGAAGATTCCCAAATCGAGCTGCAAGTGTCTGGCGACGAGGAGACGGCCAACGCTATCATCGCGGCCGCGAGGGAACAAGGTGGTGCGTTCATAAAAGTGCAGTCCGGAGAGATGTACCGCGTCAAGTCCGTGCAGAGCAAGCCGCGGGACGACGACCAGGAGTTCACTGACCACCTGCAGATCGTGGTGAAAGAAGACGGTATATTCAAATGCGTGCTGTGTAAAAAGAATAAAAATAAAGGCGAACGCACTGGGCGTTTCACCGGCGACGCGGAGTTCATAATGCGGCACATGCGCAGTCTGCACGACGCGCGCGTCTACGTGTGCCGCGCCTGCGGCCTGCTGCTCAAGAGGCGCGACCACTACATCGCGCACTTAGCACAACACAACAAAGAAAGTTCGAGCCAGGACAAGAGCAAATTACACGAATGCAACATCTGTCATAAAAAATATAGTTCTAAAACCCTTTTAGTGGAGCACATGAACCTACATAACGGCCAACGGCCTTACACCTGCCACATCTGCCACAAGAACTTCGCCTCCAAATACACGCACCAGTCGCACCTCAAGACACATCTCGACCGCCCGCGGCCGTTCAAGTGCGCGGACTGCGGCAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAGCGTGTGCGGCAAGGCGTTCGGCACGCAACACAACCTGGAGATGCACGGCGTGGTGCACTCGGGGCAGAAGCCGTTCGTGTGCGGCGTGTGCGGGAAGGCCTTCGCGCGCCGCGCCGAGCACAACCTGGAGATGCACGGCGTGGTGCACTCGGGGCAGAAGCCGTTCGTGTGCGGCGTGTGCGGGAAGGCCTTCGCGCGCCGCGCCGAGGTCAAGGACCACATGCGGATACACACCGGCGAGCGTCCCTTCGCCTGTGACGTGTGTGGCGCCACGTTCTCGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACACATTATGACGACAAGCGGTACAAGTGCGACCAGTGCCCCAAGCGGTTCAAGAGACGCAGGCTCCTGGACTACCACCTGAAGGCGTCGCACACGGGCGAGCGGCCGCTCAAGTGCGAGGTGTGCAAGGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAAACCCTACGTGTGCGAGGTGTGTGGCAAGTCCTTCAACTCGCGCGACAACCGCAACACGCATCGCTTCGTGCACAGCGACAAGAAACCCTACGAGTGCCTCGTGTGCGGCGCCGGCTACATGAGGAAGCGGCTGCTGTACGCGCACATGAACACACAGGGACATTTAGCGGAGTCAATAGTGGTGAACCAGCCGCGAGTCACCATACAGCGGATCGCCGACAGCGCTCCGGGAGACAATGTTTACGAATCCACGGAGGAGTTAGAATTAGAAACACAAGGAAAATCTACTGAAGGGCAAGGCGCAGTGTACATCGGCGACAAGAAATACATCCTTCAGGAGGGGAAGAGCTCGCTCAACCTCGTGCAGGACACCGACGATATACTCACTTATAACCTGGAAGGTGCTTTAAAGACTGAATCGAATTTTCTGGACACTGTCACCGCTGAACAGTTGGGAGAAGAGCCACAGATGGTGGAGTCTAGCGGGGGCATCGTGCGCGTGGTACAGGTCACGCTGCCCGACGGGAACAACGGCTGGGTCGCCATCAACCCTTGA
- Protein Sequence
- MASRVASCFICGTSTATITISLVQDTSNLQSGKKLLDIVSEIAEKPLKEEDIHSTVICKKCSQTCKEYDDLQVRLKHIKTELRGQIHKSSESPTKAEARTLVLPASKLHPLPPDFVLNVGRLAAVPRKTSTTIPSKLSLKVTVGSSVLTQSIKTTPALSKNIGIQKTEPTTSENDLIFEEASLPKDFMSSMVLQRIGQQGDVNNDDQPMEIDEDCSYAIVTQEDGTSEVTKKKSGDQSSVFDVSLLSSLDDSGDGEPDAEQRTDQYIVGKLEILSEREDEEEQTLSALDDKRALSSLVDRNTVGTGRQGDIVASRRQGDTVVTRRLRDSVVSRQHGDTVVTRRPRDSVVFRQQGDTEKLTLLDDQETPSSLDNTETLSQHGDTVVTRRPRDTVVSRQHGDTVVTRRPRDSVVSRQQGDTEKLTLLDDQETPSSLDNTETLSLLDDQETASSLDKRQGDTETPSSLETKETPSLLDDKETIVMSSDNSILRVVSGQQLVYGESLELLNEDDDTQPDSQDDEDSQIELQVSGDEETANAIIAAAREQGGAFIKVQSGEMYRVKSVQSKPRDDDQEFTDHLQIVVKEDGIFKCVLCKKNKNKGERTGRFTGDAEFIMRHMRSLHDARVYVCRACGLLLKRRDHYIAHLAQHNKESSSQDKSKLHECNICHKKYSSKTLLVEHMNLHNGQRPYTCHICHKNFASKYTHQSHLKTHLDRPRPFKCADCGKCFFTLQNLNQHHKTHSGLKEFECSVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYKCDQCPKRFKRRRLLDYHLKASHTGERPLKCEVCKATFVYPEHYKKHVRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKRLLYAHMNTQGHLAESIVVNQPRVTIQRIADSAPGDNVYESTEELELETQGKSTEGQGAVYIGDKKYILQEGKSSLNLVQDTDDILTYNLEGALKTESNFLDTVTAEQLGEEPQMVESSGGIVRVVQVTLPDGNNGWVAINP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -