Enis021559.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000139.1:61005-103479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0045 0.3 12.1 2.6 1 23 310 332 310 333 0.95 2 17 0.59 40 5.4 1.5 1 23 340 362 340 362 0.97 3 17 0.51 35 5.6 3.7 1 23 366 388 366 388 0.93 4 17 0.0011 0.078 13.9 1.2 1 23 393 416 393 416 0.97 5 17 1.5 1e+02 4.1 0.1 2 23 422 444 421 444 0.77 6 17 0.29 20 6.4 0.0 2 20 454 472 454 474 0.93 7 17 0.045 3.1 8.9 0.0 3 23 485 506 484 506 0.94 8 17 0.045 3.1 8.9 0.0 3 23 520 541 519 541 0.94 9 17 0.045 3.1 8.9 0.0 3 23 555 576 554 576 0.94 10 17 0.045 3.1 8.9 0.0 3 23 590 611 589 611 0.94 11 17 0.045 3.1 8.9 0.0 3 23 625 646 624 646 0.94 12 17 6.2 4.2e+02 2.2 0.0 5 23 667 686 666 686 0.92 13 17 0.00021 0.014 16.3 2.2 1 23 709 731 709 731 0.98 14 17 1.5e-05 0.001 19.8 2.6 1 23 737 759 737 759 0.96 15 17 0.0014 0.093 13.7 1.5 3 23 767 787 765 787 0.96 16 17 4.1e-06 0.00028 21.6 2.1 1 23 793 815 793 815 0.97 17 17 2.5e-05 0.0017 19.1 1.4 1 23 821 844 821 844 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCCTGGTGGGCTGCCAACGGCATTTCCTCCGCAACAGTGAGAAAGCCAACATGGCGGCGGGTGCACGGGCGCGGGCTCTGGTTTGTCAGGAGTGGAGGCGGATGTGACGTCACAGCGATGGCGTGGAGCGACTTGTTTACGCAAATGGCTACGTTCGATCGTGCGTACGAATTAGAGCAGCCTCCGGTTGAGGCACGCACGGCGCCTACTTTGCTCAAATTCGTACGCGCTCACGCGCTGTGCGCGAGCAGCGCGCTAACAGCGCGCGGCGAGCCGCCAAGAGGCGGTCTTTTGACCCTGTCGGCATGGGACGGCTACCCGCAGCACGTGTGCGGCGCGTGCCGCGCGCTGCTGCGGCGCGCGGCCGGCCTGCGCGCTCGCTCGCGCCGCGCGCACACCGAGCTCCGCCGGATACTCATGCTGCACCACACGATAACGACGAACTTGATCAGAACAGTGGACCGGGGAGCCACAGGACTGACTCTACCTCTGGTCGTCTCGGTGTGTCCGGACCCTATTTACATACAACATGAAGAAGTCGACGAGCTGATTAAGGTGGAGGTGCCTCTGATGTCCCCCTCCCCAGCCTTCCAAGTCCCCTCTCCTGTCCCCTCGTCAGTCCCCTCCTGCAAGGACGAGCTCGGCGTCAAGTGCGAAGACGACTCCAACGATGACGTGGCGCTCAGCGAGCTGCAGGAGATTAAACCGAGGGAGCGCAAGAAGAAACTCGTTCGGAAACCTAAGACGAAGAAAGCGAAGACTGAGAAGAGCAGAGAACGGAGGAAAACGGAGAAGATACGCGACGAGGATTTCCCGGAGTTCGAGAGAGAATACAACTTCGATGTCGTCATACTGTCGAGAGAGCAGCAGATCGAAGACCTCGCGTCGCGGAAAAGCAAGGATAACTACATGAATTCTGTGTTCAAATGCGACAAATGCTTCAAAGGGTTCTACACGGAGGCCACGCTCGCCAACCACAACGCGAAACATCACGATGACAGCGTGGGTCCCCACGAGTGCGAGCTTTGCCTCTGCCGGTTCCGTATTCCAGCCATCCTTCGGAGGCACCTCGCCACGCATCGCCTTAGGTTCCTGTGCCAACATTGTGGGTTCACGGCTCGGGACAGATCGCACGCGATGACTCACTCGAAAGAGCACAAGGGCTTGCGATACGAGTGCCAGTACTGCGGGGACAGTTTTAAAAAACGGTCAACGTACGGCACCCACGTGCGCATCCAGCACCCCAACGAGAACAAGTCGTGCGACGTGTGCGGGGAGACGTTCCTCGGCGCTCTCGGGCTAGCGCTGCACAAGAAAAAGTCGCACCGGCAGGCAGTGGAGGCCGGGACGGCGCAATGCGGGCAGTGCGGCGTTCGGTTCGAGAGCGAATATGCGCGCGAGCGGCACGTCGCGCTCGCCGTCAAGGGCTGCCAGCACACCAGCGCGTGCGCGCGGTGCGGCGAGAACTTCGCGGGCGAGGAGGCGCTGCAGGCGCACGCGCGCGAGAGACACCAGCAACGCGAGACGCAGTGCTTGGAGGTAAAGGGCGCGTGCGCGCGGTGCGGCGAGAACTTCGCGGGCGAGGAGGCGCTGCAGGCGCACGCGCGCGAGAGACACCAGCAACGCGAGACGCAGTGCTTGGAGGTAAAGGGCGCGTGCGCGCGGTGCGGCGAGAACTTCGCGGGCGAGGAGGCGCTGCAGGCGCACGCGCGCGAGAGACACCAGCAACGCGAGACGCAGTGCTTGGAGGTAAAGGGCGCGTGCGCGCGGTGCGGCGAGAACTTCGCGGGCGAGGAGGCGCTGCAGGCGCACGCGCGCGAGAGACACCAGCAACGCGAGACGCAGTGCTTGGAGGTAAAGGGCGCGTGCGCGCGGTGCGGCGAGAACTTCGCGGGCGAGGAGGCGCTGCAGGCGCACGCGCGCGAGAGACACCAGCAACGCGAGACGCAGTGCTTGGAGGTAAAGGGGTCACCAGTACCAGTAGTATTGGTTAATTGTGACATGACGTTCGCAAGCGAGGCGTCCCGCAGTGTGCACTACGAGCGGGTGCACCTCAAGGTGAAGGTGCGCCGCTGCCTGCCCAAATCGGGCCGCAAGTACGACCGCTACGGGGACCATTTCATGTGCGAGATGTGTGGGAAAAAGTGCCAGAATAACATCGCCCTGAAGTACCACATCCGCTCCCATACTGGTGAGAAACCGCACGCGTGTCCGCACTGCCCGAAGCACTACTCCACGCCCGTGGCTCTTCAGTACCACATCAGGTCCCACACGGGCGACAAGCCGCTGGCCTGCCCCCACTGTCCCCTGCGTTACGCGACACACAAAGGACTGCAGACTCATTTGCTGAAGCACACCGGCGAGCGACCGTTCAAATGTGAAATCTGCCAAAAGGCTTTTACACAAAAAACTATGCTGCAGAAGCACAAGACAGTACATACAGGTGAGAAACCCTTCTCGTGCGACATCTGCGGGAAAACGTTCACCCAGTCGGGCTCTGTGCACACGCATGTCAAATACGTTCACAAGAAGATGCCCGCGCCGCCGCGCAGCCGCGGCAAGCGCCCGCCCGACTGA
- Protein Sequence
- MASWWAANGISSATVRKPTWRRVHGRGLWFVRSGGGCDVTAMAWSDLFTQMATFDRAYELEQPPVEARTAPTLLKFVRAHALCASSALTARGEPPRGGLLTLSAWDGYPQHVCGACRALLRRAAGLRARSRRAHTELRRILMLHHTITTNLIRTVDRGATGLTLPLVVSVCPDPIYIQHEEVDELIKVEVPLMSPSPAFQVPSPVPSSVPSCKDELGVKCEDDSNDDVALSELQEIKPRERKKKLVRKPKTKKAKTEKSRERRKTEKIRDEDFPEFEREYNFDVVILSREQQIEDLASRKSKDNYMNSVFKCDKCFKGFYTEATLANHNAKHHDDSVGPHECELCLCRFRIPAILRRHLATHRLRFLCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDSFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQAVEAGTAQCGQCGVRFESEYARERHVALAVKGCQHTSACARCGENFAGEEALQAHARERHQQRETQCLEVKGACARCGENFAGEEALQAHARERHQQRETQCLEVKGACARCGENFAGEEALQAHARERHQQRETQCLEVKGACARCGENFAGEEALQAHARERHQQRETQCLEVKGACARCGENFAGEEALQAHARERHQQRETQCLEVKGSPVPVVLVNCDMTFASEASRSVHYERVHLKVKVRRCLPKSGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCEICQKAFTQKTMLQKHKTVHTGEKPFSCDICGKTFTQSGSVHTHVKYVHKKMPAPPRSRGKRPPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -