Enis023403.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000186.1:407366-418138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 20 6.3 0.1 9 23 39 53 34 53 0.92 2 11 1.4e-05 0.00097 19.9 4.3 1 23 94 116 94 116 0.96 3 11 1.4e-05 0.00097 19.9 4.3 1 23 145 167 145 167 0.96 4 11 1.4e-05 0.00097 19.9 4.3 1 23 196 218 196 218 0.96 5 11 1.4e-05 0.00097 19.9 4.3 1 23 247 269 247 269 0.96 6 11 1.4e-05 0.00097 19.9 4.3 1 23 298 320 298 320 0.96 7 11 1.4e-05 0.00097 19.9 4.3 1 23 349 371 349 371 0.96 8 11 1.4e-05 0.00097 19.9 4.3 1 23 400 422 400 422 0.96 9 11 1.4 99 4.2 1.5 3 20 432 449 432 451 0.93 10 11 9.5e-06 0.00065 20.5 4.9 1 23 499 521 499 521 0.98 11 11 2.4e-06 0.00016 22.4 2.9 1 23 527 549 527 549 0.96
Sequence Information
- Coding Sequence
- ATGCGCCCTGCGCTCGACCTCGCTTGCGCCACGCCCCCTGCTGGCGCGGCCGCGCGCGCGCACCGACCTGCTGCACCACGCGCCGCTCCCGAGCGCACTCTCTGTCCTCAACTCCCGTTCCGCACGGAAGACCAGCTGCACAGCCACATGAGTGTGCACGTGAAGCCCGCCTCGCCCGCCGGCAGCGAGGGGCTCTACGTCATGGAGGAACAATATCCACTGGAGGAGGACTCCCTCCTAGTCCCCCGTGTGTCCATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCGAACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCGAACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCGAACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCAGACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCGAACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGTAGGTGTTCGAACATAGAGGTGGGGGGCTCCCGGCCGCACCCGTGCAAGCTGTGCGGGCGCCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCTTTGTGCAGCGAAGGATTCTTCAGCAACAACCAGTTCGAGAGCCACGAGTGCATGGGCGCGGACCCCGAGGACCCGGAGCCGCCGCGCGCCAACCAGGAGAACAGCTACCCCGCTAAAGATAATGTTGAGATAATGAACATCCCCATAGTGACGGAAGAGCCCGACCTGCTGACGCTGCCGGTGCCGCGGCGCGTGTTCGTGTGCCGCTACTGCGGGAAGCCCTTCAAGCGCAAGGACCACTACCGCATCCACCTGCACGTGCACACCGGCCTCAAGTCCTTCTTCTGCGAGGACTGCGGGAAAGGATTCTACCGCAAGGACCACCTCCAGAAGCACTCCCAGGTGCACGCCAAGAACCGCCCGAGCCAGCGCGCGCCGGTCCGCAAGCCCAGGAAGGAGATGCCCGAGCTGTTCCCCATACACATGCTGCCCGTGAAGGCGGAAGTCAGGCCGGAGATCACCATCACTGCACCGTCGAACGCGAAACTCCGCGTCCCGCTGCAAATCAAAGTGCCGTACCAAGTGGTGACCTCCACCGACACCGGCGAGCGCCGCGTCACCACCGTGGACCCGCGCGAGCTGCTCTCCTGA
- Protein Sequence
- MRPALDLACATPPAGAAARAHRPAAPRAAPERTLCPQLPFRTEDQLHSHMSVHVKPASPAGSEGLYVMEEQYPLEEDSLLVPRVSIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSNIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSNIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSNIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSDIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSNIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGRCSNIEVGGSRPHPCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGFFSNNQFESHECMGADPEDPEPPRANQENSYPAKDNVEIMNIPIVTEEPDLLTLPVPRRVFVCRYCGKPFKRKDHYRIHLHVHTGLKSFFCEDCGKGFYRKDHLQKHSQVHAKNRPSQRAPVRKPRKEMPELFPIHMLPVKAEVRPEITITAPSNAKLRVPLQIKVPYQVVTSTDTGERRVTTVDPRELLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -