Basic Information

Insect: Epinotia nisella
Gene Symbol: -
Assembly: GCA_932294385.1
Location: CAKOAM010000059.1:5974237-5997339[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.021 1.5 9.9 1.1 1 23 280 302 280 302 0.96

2 17 0.036 2.4 9.2 0.6 3 23 309 330 308 330 0.88

3 17 0.00018 0.013 16.4 4.3 1 23 334 357 334 357 0.97

4 17 0.00022 0.015 16.2 0.5 2 23 364 385 363 385 0.97

5 17 0.0086 0.59 11.2 0.9 1 23 434 456 434 456 0.95

6 17 0.0035 0.24 12.4 0.5 1 23 526 549 526 549 0.98

7 17 0.00031 0.021 15.7 0.4 1 23 554 577 554 577 0.94

8 17 4.5e-05 0.0031 18.4 2.4 1 23 582 605 582 605 0.98

9 17 0.0003 0.02 15.8 1.3 2 23 608 630 608 630 0.96

10 17 0.0033 0.22 12.5 1.6 1 23 714 737 714 737 0.97

11 17 0.0051 0.35 11.9 0.4 2 23 810 833 809 833 0.94

12 17 6.4e-05 0.0044 17.9 0.3 3 23 840 861 839 861 0.94

13 17 0.0025 0.17 12.9 3.6 2 23 866 888 865 888 0.93

14 17 0.00061 0.042 14.8 3.4 1 23 893 916 893 916 0.98

15 17 6e-06 0.00041 21.1 5.0 1 23 920 943 920 943 0.97

16 17 0.00043 0.029 15.3 0.3 2 23 950 971 949 971 0.96

17 17 1.2e-05 0.00082 20.2 0.4 1 23 977 999 977 999 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.021	1.5	9.9	1.1	1	23	280	302	280	302	0.96
2	17	0.036	2.4	9.2	0.6	3	23	309	330	308	330	0.88
3	17	0.00018	0.013	16.4	4.3	1	23	334	357	334	357	0.97
4	17	0.00022	0.015	16.2	0.5	2	23	364	385	363	385	0.97
5	17	0.0086	0.59	11.2	0.9	1	23	434	456	434	456	0.95
6	17	0.0035	0.24	12.4	0.5	1	23	526	549	526	549	0.98
7	17	0.00031	0.021	15.7	0.4	1	23	554	577	554	577	0.94
8	17	4.5e-05	0.0031	18.4	2.4	1	23	582	605	582	605	0.98
9	17	0.0003	0.02	15.8	1.3	2	23	608	630	608	630	0.96
10	17	0.0033	0.22	12.5	1.6	1	23	714	737	714	737	0.97
11	17	0.0051	0.35	11.9	0.4	2	23	810	833	809	833	0.94
12	17	6.4e-05	0.0044	17.9	0.3	3	23	840	861	839	861	0.94
13	17	0.0025	0.17	12.9	3.6	2	23	866	888	865	888	0.93
14	17	0.00061	0.042	14.8	3.4	1	23	893	916	893	916	0.98
15	17	6e-06	0.00041	21.1	5.0	1	23	920	943	920	943	0.97
16	17	0.00043	0.029	15.3	0.3	2	23	950	971	949	971	0.96
17	17	1.2e-05	0.00082	20.2	0.4	1	23	977	999	977	999	0.98

Sequence Information

Coding Sequence: ATGGATTTCGACGAAATTGTAGTAAAAGAGAGCCCCGGCTTGTGCCGGTGCTGCCTGTCTGAAGGATGCTACAAAGACCTAGGTTCTGAATATAGTTGGATGAACGAGACTGAAATTTACGCCGATATGTTACTAGAATGCTTCGATATTAGTATATCCCAACATCCGACTGGCCCCAATGGCTCCAACCGACTCATCTGCGAAGTGTGCATCACGCGGCTGCGGGACGCCTGTAACTTCAAGAAGCAGGTGCTCGAGTCGGAGAAGAAGTTTGTGGACATGGTGGGCCGAGGGGAGTTCAGACCAAAAGTGCTGCTATACCAGCCGCAGATGAAAACTGAGCTAACCATGGAACTGGAGGAGGCCGGCGCCGACGACGGAGGCGAAGTCGAGTATCTAGAGGACGACGCAGACTTTGTCGATGAGCAGCCTCGGGTTGAGGCACGCACGGCGCCTATTTTGCTCAAATTCGTACGCGCTCACGCGCTGCGCGCGAGCAACCCGCGAGCAGCGCGCGGCGCCGCCCAGAGCCGGTCTCTTGACCAGGACCTCCTCAAAAACGAAGACTATGGAGAACCCTCGGTCTCCGAAGACATCACCGTCTCCGCTCTAGCAGTGAAAGGCAAGCGAGGCCGGCCCAAGAAGACCGCAGCCAAGCCCGAGAAGAAGGCCAAGGTGGCCAAGGTCGACGAGAAACCGAGCAAGTCGAAGGCGGTCGCTAAAGATGTAAAACCACGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGCAGACGAAAAAACCTCACTATACTGTTCAACAACACCAAAATCATACCCTTCAAATGGCGGGGGAAATACCTATGCTTCTATTGTAGTAAAGACATAACCGAATATTCCGCTCTTAGAAAACATACCAAAGTCCATGGCGACAAAATGGTGGACTGTCTCGAGTGTCCGGAGAAGTTTGTATCGCAATACGCGATGCAGAGGCATTGTATCACGGTGCACGGCTCCGGCCACAAATGCTCGTACTGTGGCAAACTGTTCACCAGAAACTCCTTCATGGACAACCATATTAGACGGACCCACTTAAAAGAGAAAAATGTGCAGTGCTCGCTCTGCAACGAGAGATTTTTTGATTCGGCACTCCTTAAGAATcatatggtgaaacacataggcgagcggaatttccactgcgatgtctgtGATGAATATCCGCACCGCCCGTACGACAGCTGTACCTCTCAGCGGCGGAGGAAAAATTTACAAATATTATTCAATAACACCTCGGTAATGCCTTTCAAATGGCGGGGAACTTACTTATGTTTCTACTGCGGGAAAAACTACGCAGAGTACCCCGAGTTTAGAAAGCATACAAAGGCACACGGGCTCTGCTCCACTAACGATTATTCCCTTAAAAATATTAAAGGGAACCATATAGAAATAAAGATTGACGTCTCTGATATCGTTTGCGAGATTTGCTGTGATCCCTTCAATAGTTTCGACGAGGTCGTCGAGCATTTGAACTCGAAACATGATCTGAGATACGACAGTAACGTAAAAATTCCCTTCCAATTATACAGACTATCAGATTTTCGGTGCTTGTTGTGTGAGGAACAGTTCAGTTACTTCGGATATTTGGTGAAACATGTGAACACTGTCCACCCGCAGAACTGCTTCATATGCGACGACTGTGGACTTACGTTTAACAAGAAAAGAGACCTCGCTCTGCATTCGAGAGACAACCATCGCCTGGGCGGGTACCCATGCGACCAATGCACAAGCAGTTTCAAAACTAGAAGCATGCTGCGTCAACATCAAAATACATTCCATTTTAGGAAATGCAAAGACTGTGCTTTAACTTTCGCGTCTCATAGCCTCTTACAGAAACATATACAGCTAGACCATCCCGATGATGGTAGTTTAAAGTGTATTTACTGTGCAAAAGAACTGCACTCCAAACAAGGTTTAAAGCAGCATCTTAATAAATGCGAAGTTAGATTGCTTTCTCAAATAGAAGCTCCTCTTCCTAATAGCGCGTTTCTTGAAGACTCGTACATTGAACCCAGAAAAAAACAGAACATTTTACAAATTCGGGAAAACATCCAATGCGTGCTAAACATGTCCACTGCTATACCGTTTAAATTCTTCTCCAAGTATTCGTGTTTCTATTGTTCCAAAAAATTCATCGAATTTGAGGACCTGAAAGAACACACTTTGAGAGAACATCCAGTGTGCGATGTAAAATCAAAATGCATGAAAAAATGCAAGGGAGAGAGAATAAACGTTAAAGTTGACATCGCTAATCTTGCTTGCAAAGTTTGCTGTCAACCCATCAACGACCTAGACACCCTAATAGACCATCTCATAGCTGACCATAAAGCTAACTACGATAAATCCTTAAAACGCTGCTTCGAAGCGTTCCGTATCATAAAAGACAACATGCCGTGTCCCTTATGTTCCGACAAAACGTTTAGATACTTCAGCACACTCCTAAGACATATCAATTCAGAACACAGCAACAACAACAGAATATGCGACTTCTGCGGACGTAGTTTTAAAAACGTCACAAATCTCAAAGTTCACATCACTTACGCTCACACCGGCTCCTGCGAATGCGACGTATGTGGGCTTAAATTCAAAAACCAATGGTGCCTGGCGCGCCACAAAGCTAAAACCCACAACGCGAAAGACTACAAGTGTCCTAAATGCCCCGAGCAGTTCCAATCTCAGTACCACAAGCAGAAGCATCTGATAACTACCCACGACATCGGACATAAATGCAGCTACTGCGGAAAAATGTTCACTAGGAACTCCTTCATGAAGGACCATATTCGCAGAACGCATTTGAAGGAGAAAAACGTGCCTTGTTCGGTTTGTAACGAGAAGTTCTTCGACAACTATCTCCTTCGCATGCACATGGTGAAGCACGAGGGAGAGAGGAAGTTTAGTTGTGAAGTGTGTGGGAAGGCTTTTCTTAGGCGCAGCAATCTCAGCTCCCACATGGATATGCATAAAAAATACGGTCATGTCCAATAG
Protein Sequence: MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMNETEIYADMLLECFDISISQHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKKFVDMVGRGEFRPKVLLYQPQMKTELTMELEEAGADDGGEVEYLEDDADFVDEQPRVEARTAPILLKFVRAHALRASNPRAARGAAQSRSLDQDLLKNEDYGEPSVSEDITVSALAVKGKRGRPKKTAAKPEKKAKVAKVDEKPSKSKAVAKDVKPRKYKGCESSSMRRRKNLTILFNNTKIIPFKWRGKYLCFYCSKDITEYSALRKHTKVHGDKMVDCLECPEKFVSQYAMQRHCITVHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDSALLKNHMVKHIGERNFHCDVCDEYPHRPYDSCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKNYAEYPEFRKHTKAHGLCSTNDYSLKNIKGNHIEIKIDVSDIVCEICCDPFNSFDEVVEHLNSKHDLRYDSNVKIPFQLYRLSDFRCLLCEEQFSYFGYLVKHVNTVHPQNCFICDDCGLTFNKKRDLALHSRDNHRLGGYPCDQCTSSFKTRSMLRQHQNTFHFRKCKDCALTFASHSLLQKHIQLDHPDDGSLKCIYCAKELHSKQGLKQHLNKCEVRLLSQIEAPLPNSAFLEDSYIEPRKKQNILQIRENIQCVLNMSTAIPFKFFSKYSCFYCSKKFIEFEDLKEHTLREHPVCDVKSKCMKKCKGERINVKVDIANLACKVCCQPINDLDTLIDHLIADHKANYDKSLKRCFEAFRIIKDNMPCPLCSDKTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -