Enis016524.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000073.1:11678-23848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2e-06 8.1e-05 23.3 1.2 1 23 120 142 120 142 0.98 2 13 6e-07 4.1e-05 24.2 0.3 1 23 152 174 152 174 0.97 3 13 3.1 2.1e+02 3.1 0.1 3 12 182 191 180 194 0.89 4 13 1.1e-05 0.00073 20.3 2.0 1 23 245 267 245 267 0.99 5 13 3.1e-07 2.1e-05 25.2 0.4 1 23 273 295 273 295 0.98 6 13 2.1e-06 0.00014 22.6 0.3 1 23 301 323 301 323 0.98 7 13 1.9e-06 0.00013 22.7 2.7 3 23 331 351 329 351 0.98 8 13 7.3e-05 0.005 17.7 0.2 1 23 357 380 357 380 0.96 9 13 0.0028 0.19 12.7 0.5 1 23 385 407 385 407 0.99 10 13 1.6e-06 0.00011 22.9 5.6 1 23 413 435 413 435 0.98 11 13 1.1e-06 7.6e-05 23.4 0.5 1 23 441 464 441 464 0.97 12 13 1.4e-05 0.00098 19.9 2.5 1 23 470 492 470 492 0.98 13 13 6.4e-05 0.0043 17.9 0.3 1 23 498 520 498 520 0.98
Sequence Information
- Coding Sequence
- ATGGACGGGAAGACCAGACGAGCTAAGTGGGCACATCTAGAGGCACTTTATAGAAGAGGCCCAGGATATAAAGGAGTACGCCTCATTAATAAAATTACCGCGCAGCACGTCATAGCAAACCTGATACCAAAGATGAGAGTCAAATACTGCACACAAGTATTTAGCCAAAACGTTGGAGTTACAATGGGATACATGGCAGTGTCTACCAAGCCGGCAGCAGACACTGTGAGCGAGACGGAGCGAATGAACGAGCCCGCGGGAGAGAGCGAGACCGCAGACTCGTGCGGCAGCGAGACCGGGTCACACGAGGGAGAGCTCGCAACGGACGCCTGCTCGACACGCGCAGGAGACAAACCATACCGCTGCGAAACTTGCGGAAAACAGTTTAGAGCACCGTATTATTTAAGGAGACACCAACAGATTCACCTAAAAATTCCCACGGGAGAGAGACCGTTTGCGTGTGATGTTTGTAAAAAGTCATTTTATAAACCTTCGGCGTTGAAGGTGCACATGCGCGGGCACACCGGGGAGAAGCCATACGGCTGCAGCATGTGCGAGAAACGGTTCCCGCAAATGGTAACAGCAGAGGTCGCGAGCGAGACGGAGCGCATGGGCGAGCCCGCGGGGGAGAGCGAGACGGCAGACTCGTGCGGGAGCGAGACCGCGCACGAGGGCGACGAGTCACAAGAGACAGGAGTCGACTCGGCGCCCGCGACCACGCCAGAAAAACCCTACAGCTGCGATGTGTGTCCAAAACAGTTCACGCTTTTGCACGATTTAAGGCGACACGAACGTACTCACTCGGGGGAGAGGCCGTTCACGTGCGATATCTGCAATAAGACCTTTACCCAGTCTGGGGCGGTCAGGCTGCACATGCGCATACACACCGGAGAGAGACCTTATCCCTGCGGCATTTGTGAAAAACGATTCACGCAACTCGGCCAGTTGAAGGTGCACGAGCGCCGGCACACGGGGGAGAAACCGTACGGCTGCAATGTGTGCGACAAGCGGTTCACGCGCTCGCACGACCTACAGTCGCACGAGCGAACTCACACCGGAGAGAAACCTTACGCGTGTGATATGTGTGAGAAACAGTTCGCTCAATCAAGTGCGTTAGTAATGCACAAACGCAACGTTCATACGAGCGAGACATACCGGTGTAAGCTTTGTATCAGGAAGTTCACAGAACTAGACGCTTTAAAAGAACATGAGCGGGTGCACACGAGCGAAAAGAGGTTCTCCTGTGAAATATGTAAAAAAAACTTCAGACAGTCGTGCCAGTTAACTAAACACATGCGGAGCCACACGGGCGAGAAACCGTACACCTGTGAGACTTGCGACAAGGAGTTTGCTCGGCTGGATTATTTGAAACGACACGAGCGGATAGTGCACATGGGAGAAAAACGATACTGTTGCCAGGTATGTAAGAAAGAGTTCACGGGCTCCGGGAACCTGAGGAAACACGAGCGAATCCATACTGGCGTCAAACCGTACTCATGCGATATCTGTAGCAAAGTGTTCGGCGCCTCAGGCAGCTTGAAGAAACATAAACTAATGCACGCTAAAGAAGCGAACAAGCCTTGA
- Protein Sequence
- MDGKTRRAKWAHLEALYRRGPGYKGVRLINKITAQHVIANLIPKMRVKYCTQVFSQNVGVTMGYMAVSTKPAADTVSETERMNEPAGESETADSCGSETGSHEGELATDACSTRAGDKPYRCETCGKQFRAPYYLRRHQQIHLKIPTGERPFACDVCKKSFYKPSALKVHMRGHTGEKPYGCSMCEKRFPQMVTAEVASETERMGEPAGESETADSCGSETAHEGDESQETGVDSAPATTPEKPYSCDVCPKQFTLLHDLRRHERTHSGERPFTCDICNKTFTQSGAVRLHMRIHTGERPYPCGICEKRFTQLGQLKVHERRHTGEKPYGCNVCDKRFTRSHDLQSHERTHTGEKPYACDMCEKQFAQSSALVMHKRNVHTSETYRCKLCIRKFTELDALKEHERVHTSEKRFSCEICKKNFRQSCQLTKHMRSHTGEKPYTCETCDKEFARLDYLKRHERIVHMGEKRYCCQVCKKEFTGSGNLRKHERIHTGVKPYSCDICSKVFGASGSLKKHKLMHAKEANKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -