Enis020345.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000119.1:120660-123002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.5e-06 0.00065 20.5 0.6 1 23 22 45 22 45 0.98 2 13 9.5e-06 0.00065 20.5 0.6 1 23 80 103 80 103 0.98 3 13 9.5e-06 0.00065 20.5 0.6 1 23 138 161 138 161 0.98 4 13 0.00013 0.0086 16.9 0.2 1 21 196 216 196 216 0.97 5 13 9.5e-06 0.00065 20.5 0.6 1 23 240 263 240 263 0.98 6 13 9.5e-06 0.00065 20.5 0.6 1 23 298 321 298 321 0.98 7 13 9.5e-06 0.00065 20.5 0.6 1 23 356 379 356 379 0.98 8 13 9.5e-06 0.00065 20.5 0.6 1 23 414 437 414 437 0.98 9 13 9.5e-06 0.00065 20.5 0.6 1 23 472 495 472 495 0.98 10 13 9.5e-06 0.00065 20.5 0.6 1 23 530 553 530 553 0.98 11 13 9.5e-06 0.00065 20.5 0.6 1 23 588 611 588 611 0.98 12 13 0.00011 0.0078 17.1 1.9 2 23 647 669 646 669 0.95 13 13 9.5e-06 0.00065 20.5 0.6 1 23 704 727 704 727 0.98
Sequence Information
- Coding Sequence
- ATGTTTCAACTACCGACTCACCGATCCGATCACTGCCTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGAGCTTATCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTTATCTGGTCCCTCCAGCCAGACCAGAGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATTAACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTTATCTGGTCCCTCCAGCCAGACCAGAGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATTAACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGCCAGACCAGAGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATTAACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGAGCTTATCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTTATCTGGTCCCTCCAGCCAGACCAGAGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATTAACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGAGCTTATCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTTATCTGGTCCCTCCAGCCAGACCAGAGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATTAACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGAGCTTATCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGAGCTTATCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGGGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTGCAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGGGCTGGTCACCGATCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTACAAGTGCGGCACCTGCTCGAAGGGGTTCATCAGCAAGGCCATGCTCAACAGACATGTGCGGGTGAGACATGTATTACACTATGCACTCGCCAGGTCCCTCCAGCCAGACCAGGGCTGGTCACCGTTCCGATCACTGCCTCCAGAAGTCCAGATCCACACGGGCGCGCGGCCGTGCAAGTGCGGCCCCTGA
- Protein Sequence
- MFQLPTHRSDHCLQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQSLSPFRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALIWSLQPDQSWSPIRSLPPEVQINTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALIWSLQPDQSWSPIRSLPPEVQINTGARPYKCGTCSKGFISKAMLNRHVRPDQSWSPIRSLPPEVQINTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQSLSPFRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALIWSLQPDQSWSPIRSLPPEVQINTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQSLSPFRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALIWSLQPDQSWSPIRSLPPEVQINTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQSLSPFRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQSLSPFRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQGWSPIRSLPPEVQIHTGARPCKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQGWSPIRSLPPEVQIHTGARPYKCGTCSKGFISKAMLNRHVRVRHVLHYALARSLQPDQGWSPFRSLPPEVQIHTGARPCKCGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -