Enis015079.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000063.1:131628-140185[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 6.4 4.4e+02 2.1 0.1 9 23 42 56 41 56 0.87 2 43 0.00025 0.017 16.0 0.3 1 18 62 79 62 79 0.92 3 43 6.5 4.5e+02 2.1 0.1 9 23 80 94 79 94 0.87 4 43 0.00025 0.017 16.0 0.3 1 18 100 117 100 117 0.92 5 43 6.5 4.5e+02 2.1 0.1 9 23 118 132 117 132 0.87 6 43 0.00025 0.017 16.0 0.3 1 18 138 155 138 155 0.92 7 43 6.5 4.5e+02 2.1 0.1 9 23 156 170 155 170 0.87 8 43 0.00025 0.017 16.0 0.3 1 18 176 193 176 193 0.92 9 43 6.5 4.5e+02 2.1 0.1 9 23 194 208 193 208 0.87 10 43 0.00025 0.017 16.0 0.3 1 18 214 231 214 231 0.92 11 43 6.5 4.5e+02 2.1 0.1 9 23 232 246 231 246 0.87 12 43 0.00025 0.017 16.0 0.3 1 18 252 269 252 269 0.92 13 43 6.5 4.5e+02 2.1 0.1 9 23 270 284 269 284 0.87 14 43 0.00025 0.017 16.0 0.3 1 18 290 307 290 307 0.92 15 43 6.5 4.5e+02 2.1 0.1 9 23 308 322 307 322 0.87 16 43 0.00025 0.017 16.0 0.3 1 18 328 345 328 345 0.92 17 43 6.5 4.5e+02 2.1 0.1 9 23 346 360 345 360 0.87 18 43 0.00025 0.017 16.0 0.3 1 18 366 383 366 383 0.92 19 43 6.5 4.5e+02 2.1 0.1 9 23 384 398 383 398 0.87 20 43 0.00025 0.017 16.0 0.3 1 18 404 421 404 421 0.92 21 43 6.5 4.5e+02 2.1 0.1 9 23 422 436 421 436 0.87 22 43 0.00025 0.017 16.0 0.3 1 18 442 459 442 459 0.92 23 43 6.5 4.5e+02 2.1 0.1 9 23 460 474 459 474 0.87 24 43 0.00025 0.017 16.0 0.3 1 18 480 497 480 497 0.92 25 43 6.5 4.5e+02 2.1 0.1 9 23 498 512 497 512 0.87 26 43 0.00025 0.017 16.0 0.3 1 18 518 535 518 535 0.92 27 43 6.5 4.5e+02 2.1 0.1 9 23 536 550 535 550 0.87 28 43 0.00025 0.017 16.0 0.3 1 18 556 573 556 573 0.92 29 43 6.5 4.5e+02 2.1 0.1 9 23 574 588 573 588 0.87 30 43 0.00025 0.017 16.0 0.3 1 18 594 611 594 611 0.92 31 43 6.5 4.5e+02 2.1 0.1 9 23 612 626 611 626 0.87 32 43 0.00025 0.017 16.0 0.3 1 18 632 649 632 649 0.92 33 43 6.5 4.5e+02 2.1 0.1 9 23 650 664 649 664 0.87 34 43 0.00025 0.017 16.0 0.3 1 18 670 687 670 687 0.92 35 43 6.5 4.5e+02 2.1 0.1 9 23 688 702 687 702 0.87 36 43 0.00025 0.017 16.0 0.3 1 18 708 725 708 725 0.92 37 43 6.5 4.5e+02 2.1 0.1 9 23 726 740 725 740 0.87 38 43 0.00025 0.017 16.0 0.3 1 18 746 763 746 763 0.92 39 43 6.5 4.5e+02 2.1 0.1 9 23 764 778 763 778 0.87 40 43 0.00025 0.017 16.0 0.3 1 18 784 801 784 801 0.92 41 43 6.5 4.5e+02 2.1 0.1 9 23 802 816 801 816 0.87 42 43 5.1e-06 0.00035 21.3 2.9 1 23 822 844 822 844 0.97 43 43 0.015 1 10.4 0.0 1 22 850 871 850 871 0.96
Sequence Information
- Coding Sequence
- ATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTCATCCACGAGCGCTACCACAGGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTGCGGACACTACCGACAAAATGCAACCTGACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCAGCCACTGCGGCAAGGCCTTCAGCCAGCGCTCCACGCTCGTCATCCACGAGCGCTACCACAGCGGAGCGCGGCCCTACGTGTGCGCGCTGTGCGGGCGCGGCTTCGTGGCGCGCGGGCTGCTCTCCATGCACCTCAAGACCACCTGCATCTAG
- Protein Sequence
- MQPDAARARALGREAARVQPLRQGLQPALHARHPRALPQVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVRTLPTKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYVCALCGRGFVARGLLSMHLKTTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659607;
- 90% Identity
- iTF_00659607;
- 80% Identity
- iTF_00659607;