Edem001422.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000023.1:187689-201825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00014 0.013 17.3 0.3 1 23 303 325 303 325 0.98 2 21 3.5 3.4e+02 3.5 4.8 1 23 332 354 332 354 0.96 3 21 0.3 30 6.8 2.0 1 23 358 380 358 380 0.97 4 21 6.6e-05 0.0064 18.3 2.0 1 23 385 408 385 408 0.97 5 21 2 1.9e+02 4.3 0.0 3 23 415 436 414 436 0.85 6 21 2 1.9e+02 4.3 0.0 3 23 477 498 476 498 0.85 7 21 2 1.9e+02 4.3 0.0 3 23 539 560 538 560 0.85 8 21 2 1.9e+02 4.3 0.0 3 23 601 622 600 622 0.85 9 21 6.8 6.6e+02 2.6 0.1 3 14 663 674 662 681 0.77 10 21 3.2 3.1e+02 3.6 0.0 3 21 720 738 719 741 0.79 11 21 6.8 6.6e+02 2.6 0.1 3 14 782 793 781 800 0.77 12 21 6.8 6.6e+02 2.6 0.1 3 14 839 850 838 857 0.77 13 21 2 1.9e+02 4.3 0.0 3 23 896 917 895 917 0.85 14 21 3.2 3.1e+02 3.6 0.0 3 21 960 978 959 981 0.79 15 21 6.6 6.4e+02 2.6 0.0 3 14 1022 1033 1021 1040 0.77 16 21 2 1.9e+02 4.3 0.0 3 23 1060 1081 1059 1081 0.85 17 21 2 1.9e+02 4.3 0.0 3 23 1124 1145 1123 1145 0.85 18 21 2 1.9e+02 4.3 0.0 3 23 1188 1209 1187 1209 0.85 19 21 3.2 3.1e+02 3.6 0.0 3 21 1252 1270 1251 1273 0.79 20 21 0.0014 0.14 14.2 0.3 1 20 1284 1303 1284 1308 0.94 21 21 0.02 1.9 10.5 0.6 2 21 1312 1331 1311 1334 0.88
Sequence Information
- Coding Sequence
- ATGTGTAATTTAGTCTTGAAAACCGAAGACACtatcataaattatttatttatatttcagttGAACACAGATCGTATTCGCAGAATAGACTGTGGGACCAGTCAACTCTTCCATCTGACTTCAACTGAAGTCGAAATTGTACACATACCACCTTCTGAGAAAATAAATGAACCTAATGTTGACGGTTTACCCAAGATAGAGCGGGTTTATCAAGCTGAACCACATACTATAAGCATAGATGATGACACTGATGATTATGAAACCAATTCTATTGATTTAGAAGCAAATATGCACACTTACAATGTTAAAGCAGTTAATGTAGAGCATGAAGCAAGCATAAACACTGATGAAGGTGAAGACATAGACGAACCAAATTCTGTAGAGATAGATGAAGGAAATACACACACTGTTAACATAGATGCACCAAATATACAAAAAGCGGGTGTTCTTAAACGAATTATAGATAAAGACATGCAAGAAACGCGTTATAATACAGTTAACATTGCCCCCATAAGGAAGCCTGAATTGAAAATGGAACTGGAAATGTTGAAAGGTCAACTTAAAATCAAAGTCGTGAAGAAAGCGATAAATGTGAATGCTATTACAACCTTGAAAAGGGTAAGACCAGAAATGGAGGCTTCTAAAGTAAAGGTACAAAAAGTCAgtagaaataaaatgaaaacagGCAGGTTGAATCCTTCTCTAGTGAGGAAGTTGAATAAGGCAAGTGCTGTCAAACGAAAGAGGTTGTGGTTTCCCAAGGATCCAGCCCACAATTATTTGCAGGAGTTTGATTATTCCAAATTTGAGAGGGATTATGCAGTCAAAATTGTTACTTTGAGCAAGGAAGAGCAGTTGGAAGAGATCGCCGCGCGCAAGAAGTCCGCCAGCTACACCGCGGCGCGGTTCCCGTGCCAGGACTGCGGGAAGGCCTTCGGCATGGAGTCCGCCTACAAGAACCACCGCCAGCGGCACAGCCCTAGCGTGGGCGAGTACGTGTGTGACCTCTGCTTCGTGCGCTTCAAAAAGCGCAGCCACCACCAGGGCCACCTGGACACCCACCGGCTCAAGTTCAACTGCGAACGCTGCCCCTTCGTCTCTAGAACTAAGCACCAGGCGAAGGCCCACTACGACATGCACGAGGGAAAGACCTTCGAGTGCCCACACTGTGGGAAAACCTACAACAAGCAGGGGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATACTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTCTATGTGTATATTGTAGGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATACTCGTGCACAAGCACGCGCAGGTGCTGTACTCTATGTGTATATTGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATACTCCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTCTATGTGTATATTGTAGGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTCTATGTGTATATTGTAGGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATGCTCGTGCACAAGCACGCGCAGGTGCTGTACTCTCTATGTGTATATTGTAGGCACAGTGTCACACGTCTGTCTGTCAGCGAGCAGTCGACGTACTTCTCGCACGTGCGGAACGCGCACCCGGCCGCGCACGTGGCGTGCGACCTGTGCGGGGAGACCTTCATCGGCGCGCGCGGCATCTACGTGCACAAGATACTCGTGCACAAGCACGCGCAGATCAATAAACTGCGACAGTTCAAATGCACCGTCTGCTCAGCGACATTCGTCAGTCAGGACGCGCTGCAGACGCACACGGACTTCGGGGACCACACGGGCTGCCCGTGCGAGCAGTGCGGCGAGAGCTGTGCGAGCGAGGAGGCGCTACAGACGCACCTGGGAGCGAGGCACCCGGCCGAGGCGCATTGGTGTGAGGAGATAACTTTAAACTCGAGGGAGTCCTGA
- Protein Sequence
- MCNLVLKTEDTIINYLFIFQLNTDRIRRIDCGTSQLFHLTSTEVEIVHIPPSEKINEPNVDGLPKIERVYQAEPHTISIDDDTDDYETNSIDLEANMHTYNVKAVNVEHEASINTDEGEDIDEPNSVEIDEGNTHTVNIDAPNIQKAGVLKRIIDKDMQETRYNTVNIAPIRKPELKMELEMLKGQLKIKVVKKAINVNAITTLKRVRPEMEASKVKVQKVSRNKMKTGRLNPSLVRKLNKASAVKRKRLWFPKDPAHNYLQEFDYSKFERDYAVKIVTLSKEEQLEEIAARKKSASYTAARFPCQDCGKAFGMESAYKNHRQRHSPSVGEYVCDLCFVRFKKRSHHQGHLDTHRLKFNCERCPFVSRTKHQAKAHYDMHEGKTFECPHCGKTYNKQGTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKILVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSLCVYCRHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKILVHKHAQVLYSMCILHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKILQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSLCVYCRHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSLCVYCRHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKMLVHKHAQVLYSLCVYCRHSVTRLSVSEQSTYFSHVRNAHPAAHVACDLCGETFIGARGIYVHKILVHKHAQINKLRQFKCTVCSATFVSQDALQTHTDFGDHTGCPCEQCGESCASEEALQTHLGARHPAEAHWCEEITLNSRES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -