Edem047947.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001917.1:311432-328562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.05 4.8 9.3 2.3 1 19 382 400 382 409 0.94 2 9 1.8 1.8e+02 4.4 1.6 2 23 433 453 432 454 0.93 3 9 0.12 12 8.0 1.0 1 23 489 512 489 512 0.93 4 9 0.011 1.1 11.3 3.4 2 23 519 541 518 541 0.93 5 9 0.00057 0.055 15.4 0.9 3 23 552 573 551 573 0.92 6 9 4.6e-05 0.0045 18.8 0.3 1 23 580 603 580 603 0.94 7 9 0.00064 0.062 15.2 3.2 1 23 609 631 609 631 0.98 8 9 0.008 0.78 11.8 0.7 2 23 641 662 640 662 0.96 9 9 0.0094 0.91 11.6 3.5 1 23 668 691 668 691 0.94
Sequence Information
- Coding Sequence
- atGTTTGAAACAAAATACACAAAGCTGTGCCGGGGCTGCCTCAGCTCGGACAGGAAGCTCACTCCTGTATCTGCCGGTGGTTTAAATTTCTACTACTTTCTATTGGCGGAAGAGCGACGGCTGGATGCACTAAGTATAGCAGGCCTCGAGCTATGTTGGGAATGTGTGGCTATGCTGCGCCGGACCCAGATATTTCAGGCACGGGTTCAACAAGCACATACAATTCTGGAAGATTCCCTAGGAATTCCTACAGGAAAAGCTACATTGTCTTCACTAACTATCCAACAGAAAGTAGAATATGATGATGTTTTTGAGGAAACCAAACCAAATGAGCAACCATTGTATGGTGAAACGAAAGTCCGTAATGTTACTGTTGATAAAATTCTCATACCTACAAAATACAAAGCACTAGTAACTGGAAATGTGAAAACCTTTAAATATGAAAGTGATGATGATTCAACAAAGATCAACTATGATGAAGCTCGAAATATGAGTGATGACAGTGATGATCATGAGAATGTTTATGCCTGCGATAGTCGTTCTAGTTCACCAGATATAATTACTCCTCCAAAAAAGTTGCAAGATGTAAAAATAATCAACCCCTTAGATTTGAATGATGAAAAACCTAAAGGTAGAGCTCAGTTACAGGCTACACGCGGAATAATAATCAGACCTGTAAAATCTAGAAAACTACCAGCTCCAGCTATTGTTAGAACTCCAGTAATAGCTAAACTGGAACTGGAACTACAAAAGTTAATGCAAAATGCAAAAAATTGCGCACAAAATGCGACCCAACAAAACAGGGCTAAaccacaaaaaacaaaaaaagaatctAGAACTAGCAATGAAAGAAATGCAGGATCTTCAAATGATATTGCTGATTGTGATCAAGATGATTCGGAAAGTAGTGCAGAGGATGATGCCTCAAATCATGTTCATAAAGAATCTAAaactatatataaaagaagtaAACGAGATTCAGATCCTGATTTCAGTCTCGTAGATGATGATGGAGATTCAGATCATAGTAAATCTGAAGAAGATGACCCCAAAAAAAACATGGATGATGAAATAGAAATGAGCGTGGAcgatttaaaaagtgttttagAGAAACAGGATGCCATTGTTGATGAAAAGAAACCGTATGATTGTAGTGTTTGCGGCCAGCGATTCAGCCTTCGCAGAGCTTTGACGTATCATGCACTATGTTATCATAAAGCAACTCACCCCGCACAATTCAGAAAAGGAGCCTTCCATAATCCCCCGCCCACCATACCTGAGAAGCCGAGTCTCTGGCGGTGCAGTGTGTGCAAAATAATGCTACGGAGAGAGCACATTCTTGCACATATGAATGCACATCACCGTACCCAGTACTTCTGCAATGGACAGGGCTGCGAATGGTCCATGAAGGGATTTTGGATAAAGGAAGACTATATTGAGCACTGGGCCGCCATCCACAAGCAGTTCGTTTGTTACAGCTGCGGGAAACGGAAGAGGAAGAAATCTGCGTTGGAGTTGCACATCACTGAAAAACACCTCCGCCTGCCAAAGCAGAAATGCCCTCACTGCAGTCGTACCTACGTCCATCGCAATGCATTGCTCCAACACGTGACCAATCGTCACTCTGTCCCCGAGCCCGCCGAGCACCGGTACTGCGTCGAGTGTGACTTCACCTTCAACTCGATCTCCAATCTGCAGAAACACCTGTATAATAGACACAACGAGAATCGGACCAAgtACCCATGCCCGGATTGTGGCCGCGTGCTGGCCACCAAGTCCTCCTACCAGAACCACTATAGCCTCTTCCACACTGGCAAGACGGACTTCTGCTGCCACGTGTGCGGGAAGTATTATTCCAAGGCGCAGGCGTTGGAAGGTCATCTGAAGACACATTTGAATATAAAAGCGCCCAAGGACAAGCCGTGCGCCATATGCGGACGGAAGTTCCAGACCAACAGAATCCTGCGCTATCACATGTACACGCACTCAGGCGAGCGGCCGCACGCGTGCCCTCACTGCGACGCTGCGTACGCGCAGCCGCACTGCCTGCGCCTGCACCTCGCGCGGCGCCACGGCCTGCGCGCGCCCGAGACACTCAAGAAGAAAGTGCCGGCCACGCCCACAACCACACAGGACGGCCAACAGACAAGCTTGACTGGGGGCGGGCCGGGCTCACCGTTAAATATCGCGCCAGCTGCCGTCATTCCATAA
- Protein Sequence
- MFETKYTKLCRGCLSSDRKLTPVSAGGLNFYYFLLAEERRLDALSIAGLELCWECVAMLRRTQIFQARVQQAHTILEDSLGIPTGKATLSSLTIQQKVEYDDVFEETKPNEQPLYGETKVRNVTVDKILIPTKYKALVTGNVKTFKYESDDDSTKINYDEARNMSDDSDDHENVYACDSRSSSPDIITPPKKLQDVKIINPLDLNDEKPKGRAQLQATRGIIIRPVKSRKLPAPAIVRTPVIAKLELELQKLMQNAKNCAQNATQQNRAKPQKTKKESRTSNERNAGSSNDIADCDQDDSESSAEDDASNHVHKESKTIYKRSKRDSDPDFSLVDDDGDSDHSKSEEDDPKKNMDDEIEMSVDDLKSVLEKQDAIVDEKKPYDCSVCGQRFSLRRALTYHALCYHKATHPAQFRKGAFHNPPPTIPEKPSLWRCSVCKIMLRREHILAHMNAHHRTQYFCNGQGCEWSMKGFWIKEDYIEHWAAIHKQFVCYSCGKRKRKKSALELHITEKHLRLPKQKCPHCSRTYVHRNALLQHVTNRHSVPEPAEHRYCVECDFTFNSISNLQKHLYNRHNENRTKYPCPDCGRVLATKSSYQNHYSLFHTGKTDFCCHVCGKYYSKAQALEGHLKTHLNIKAPKDKPCAICGRKFQTNRILRYHMYTHSGERPHACPHCDAAYAQPHCLRLHLARRHGLRAPETLKKKVPATPTTTQDGQQTSLTGGGPGSPLNIAPAAVIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -