Edem027096.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000500.1:249919-266968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0073 0.71 11.9 0.6 1 23 217 240 217 240 0.96 2 10 0.21 20 7.3 0.1 1 23 247 269 247 269 0.97 3 10 1.2 1.2e+02 4.9 4.5 1 23 273 295 273 295 0.99 4 10 0.0043 0.42 12.6 2.5 1 23 951 974 951 974 0.97 5 10 0.00081 0.079 14.9 1.7 1 23 977 1000 977 1000 0.95 6 10 1.3 1.3e+02 4.8 0.1 3 20 1009 1026 1008 1028 0.91 7 10 0.00091 0.089 14.7 0.1 2 23 1041 1063 1040 1063 0.91 8 10 0.00073 0.071 15.1 0.9 1 23 1069 1092 1069 1092 0.98 9 10 0.0014 0.14 14.2 0.6 3 23 1103 1123 1102 1123 0.97 10 10 0.024 2.3 10.3 0.0 1 23 1129 1152 1129 1152 0.94
Sequence Information
- Coding Sequence
- ATGCAGGCAGAAGAAATTAAGCTCGAATATAAACTAGACAAGTCGCAGTGTCTTACCTGCCTAACTTTTGGTCGAAAACTTACAACTTTGGGTAAAAATGAGGATATATTTAGAAGAATTGCACCTCGAACTGCATACTGGATAAATTTTGATATGGAATCGGTGCAGATTTGCTGGGAGTGTAACAAAGCACTATCAAAAATATCCGACTTCCAAAACCAAGTGCTGAGAGCCACCAAACTTTTAGAAATGGGACAGGCATATGGAACCTTGTCAAATCTAACCACTGTCATATTCCGTGACATAAGTCCTAACACCATCTACATCACGCAAACAAATGAACCAACACACACAGATACAAAACCCGAGGCAGATGGCATAGACAATGATACTGGCCATATTTCAGATGACATAGACAACACAGATGAAATAGAATTGGTAAAAGCTGAATTGGAGAAGGTTAAGAATATGGAAACTGTGAAAGTAAAGAATAATAAGTGGGCATTGAAAAGAGCTTTGTTGAATAAAAAGCCGAAATTTAGAATAATTAatgattataaaatatttagaaaGATTAGAATAAGTGCCGAAGAACTAAGAGGCTGTATGGAGAAAGAGAGGCATAGTGAATTGTACAATTCATGTGATTTTAAATGTGAGAGCTGTGTGCTTGGGTTTAAGGATAAGAATTCTTTGGCTAAGCATGTTGAAAAACGTCACAGTGAGACTACAGTCCCATACACCTGCGATATATGCAGCATTCGAATGACCGAAAAGACTTCGCTAGCAGCACACGTATCTAACCACTACTACATGTACGAATGCACGCTGTGCGCGTTCGTCAGCCGCCACAGGACACACCGGCGCGTTCATGCGAGGACGCATAAGACTGTGCTGCAGTGCGTCAAGTGTGAATTGAAGTTTGGgtCAAATTGTCAAATTAGCAGTTCCGACTTCCTTAGGTATCTGGATCGCCTGCTCGATAAACTAAGTAGCGATGATAGAGACTGCATCATATTAGGAGACATTAACATAAACGACTTAGGGAGCAACGATAAACCAGAGCTAAAAAAATTGTACGACTTGCTCGCAACCCATGACTTCAGAAACGTGGTAAACTTTCCAACAAGAGTGACAGCCACAACGTCTACTAATCTTGACCACGTCTACTGGAACGGGCCGCGTTCTGCGCTCCGCGCGGCGCCGGTCACTACGCACCTCAGCGACCACCTCGCCGTCCGAGCCGAGCTAATGCGCCCGCGCGCCACGCCTGCACCCCTCACCCGCCGCGCAAGGGTCTATACGCCCCGATACTACCATGAATTCCGAGCGGCGATACTGAGTGTGGATTGGCAAGAAATTATCCACAGAAATAATGAGTCCGTCGTGAAAATGATTGTATCCTTGATTACCATACTTAGAAATAAATTCGAAATTTGCTTTCCGATAAAAACCATGAACAACAAAAGAATGGAATCTTGGGTGACGGGCGACATTTACGACCTTAAGACGTTATTGTTCGAAATCATTGAGCTAGGAAAACAATTACCAGAGAACGAACATGTTAAAAATCTAGTTTCAGCTGAACTGTCTCCAATTCTCGCGACCATTTACAATAGATGCCTCGGCGAGGGCGTCTTTCCCGATCCATTAAAAGAAAGCCGTATATCGCCGCTATTCAAAAGGAAGGGAAAGAGAAGTGACATCGATGGATACAGACCAGTTGCCATTATCCCAGTGATAAGCAAGATTTTTGAGCACGGCCTAAGCTCGAGGTTGACGGATTTCCTTAACACAACTAACTGCTTATCTAATAGACAACATGCATATCGGAAAGGTCACTCCACAATCTCGCTAACACGGGCTGTAGTTCGACAGATAATGGAGGCTCGTGAACTCAGAAACCAAGTTGCAGTTCTATGTTGCGACCTATCTAAAGCGTTCGACGTCGCAGATCATGAAGTTCTGGTTAGTAAACTTCGACATTATGGCCTCGAAGGTCCTTCACTGGCGCTAGTAACAGACCTGCTGCGGAATAGAACGCAGGTTGTCGTTGCGGACAGCGGTCGCGTAAGATCAGACGCAATAACCACAAGTATGGGCGTGGCACAGGGATCCTCCGTGTCAAATATCCTCTTCTCGTTACTGCTGAACGACCTGCCTGACGCCATTCACAGTGGAGAGACATACATGTATGCTGATGATGTCGCGGTTGTCGTGTACGCCTCAACTTATGAAGAGCTTGAGGATAAATTAAATTTGACGGCCGCATCGGTAGCAAACTGGTTTGCTAACAACGGCCTCATTTTAAATACGAGAAAGACTCAGCACATAGCCTTCGATCTGTCTGGCCGCCCAGTGAAATCGCTGTCAGTATTGGCTGCTGGTAATATCATTGACCAAGTCTCCAGCTCAACATTCCTGGGTTTTGAACTAGACAGTGGCCTGACCTGGAGTCTACATATTGATAAGGTGTGCACTAAATTGTCGACGGCCTGTTTTGCCCTAAAACGGCTGGCGCGAATACTTCCGATGGAAATGGTGCGGGCCTGCTATTTTGCATCGGTACATGCGCACCTGCAGTACGGAGTCGAGCTGTGGGGTGGAGCCGCCGATTGGCAGAGAGTTTTTCGCCTGCAGAAGCGTGCAGTACGTGCAATAGCGCGCGTCTCACAAACAAACTCGGCAAAACCAATTTTTAAAATGCTAGGTATATTGACGCTACCTTCACTTTTGATACTGCAAATGGCGGTCACTGCTCGCGATGAAGTGGACACACTGTGTTTAAAGGACGTCCCACGTAGGTCCCGTCGGGAATTCTTTAAACACTACAAAGAGTGGCACGAGAGGTTCATCTGCGATCAGTGCGGCGTCAGCTTCAAGATGCGGTACTGCATCAAGGACCACATCAGGAAACAACACTCCTTGTTTGAATGCAAGCGCTGCGATAAGCGGTTTTCTCGATACAACGGACTGTGGCTACACAATAAGGTGCGCCACAGCTCATCACCGCAGGCCGCGTACTGCGTGGAGTGCGACCGGCGGTACGCGGACGTGTACCGGTACCGGTGGCACCTCAGCAACAGCGCGCGCCACCGGCCCCGCGCCAAGCTGCGGATCCCGTGCCCTGGCTGCGACAAAGTGTTCTCGAAGAAAATCTACATGAAAGATCACTATGATCTCGTGCATCTCAAGAAATACAAGTACCGGTGCGACCAGTGCGATAAGAATTTCCTCCGCAATGCAGACCTGGTGCAACACCGCAAGAGGGTACACGAGGGGATACTGCCGCCCAGGAACAAGATCTGCTACATGTGCGGACGAGGGTTCACCACGAACAAGATCCTGAACAACCACGTGCGCACGCACACGGGCGAGCGGCCGTTCGCGTGCGCGCGCTGCCCCGCTGCGTTTGCGCAGCGCGTCGCGCTGCagcagcacgcgcgcgcgcggcacGCGTGA
- Protein Sequence
- MQAEEIKLEYKLDKSQCLTCLTFGRKLTTLGKNEDIFRRIAPRTAYWINFDMESVQICWECNKALSKISDFQNQVLRATKLLEMGQAYGTLSNLTTVIFRDISPNTIYITQTNEPTHTDTKPEADGIDNDTGHISDDIDNTDEIELVKAELEKVKNMETVKVKNNKWALKRALLNKKPKFRIINDYKIFRKIRISAEELRGCMEKERHSELYNSCDFKCESCVLGFKDKNSLAKHVEKRHSETTVPYTCDICSIRMTEKTSLAAHVSNHYYMYECTLCAFVSRHRTHRRVHARTHKTVLQCVKCELKFGSNCQISSSDFLRYLDRLLDKLSSDDRDCIILGDININDLGSNDKPELKKLYDLLATHDFRNVVNFPTRVTATTSTNLDHVYWNGPRSALRAAPVTTHLSDHLAVRAELMRPRATPAPLTRRARVYTPRYYHEFRAAILSVDWQEIIHRNNESVVKMIVSLITILRNKFEICFPIKTMNNKRMESWVTGDIYDLKTLLFEIIELGKQLPENEHVKNLVSAELSPILATIYNRCLGEGVFPDPLKESRISPLFKRKGKRSDIDGYRPVAIIPVISKIFEHGLSSRLTDFLNTTNCLSNRQHAYRKGHSTISLTRAVVRQIMEARELRNQVAVLCCDLSKAFDVADHEVLVSKLRHYGLEGPSLALVTDLLRNRTQVVVADSGRVRSDAITTSMGVAQGSSVSNILFSLLLNDLPDAIHSGETYMYADDVAVVVYASTYEELEDKLNLTAASVANWFANNGLILNTRKTQHIAFDLSGRPVKSLSVLAAGNIIDQVSSSTFLGFELDSGLTWSLHIDKVCTKLSTACFALKRLARILPMEMVRACYFASVHAHLQYGVELWGGAADWQRVFRLQKRAVRAIARVSQTNSAKPIFKMLGILTLPSLLILQMAVTARDEVDTLCLKDVPRRSRREFFKHYKEWHERFICDQCGVSFKMRYCIKDHIRKQHSLFECKRCDKRFSRYNGLWLHNKVRHSSSPQAAYCVECDRRYADVYRYRWHLSNSARHRPRAKLRIPCPGCDKVFSKKIYMKDHYDLVHLKKYKYRCDQCDKNFLRNADLVQHRKRVHEGILPPRNKICYMCGRGFTTNKILNNHVRTHTGERPFACARCPAAFAQRVALQQHARARHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -