Edem026662.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000489.1:138764-159021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.2 4.1e+02 3.2 0.2 1 23 64 87 64 87 0.89 2 18 7.7 7.5e+02 2.4 0.1 9 23 101 115 95 115 0.76 3 18 0.0069 0.67 12.0 1.4 1 23 188 211 188 211 0.96 4 18 6.1e-05 0.006 18.4 3.1 2 23 216 237 215 237 0.97 5 18 0.099 9.6 8.3 0.8 2 23 245 265 245 265 0.97 6 18 4.7 4.5e+02 3.1 0.1 1 10 271 280 271 285 0.86 7 18 0.099 9.6 8.3 0.8 2 23 354 374 354 374 0.97 8 18 4.7 4.5e+02 3.1 0.1 1 10 380 389 380 394 0.86 9 18 0.099 9.6 8.3 0.8 2 23 463 483 463 483 0.97 10 18 4.7 4.5e+02 3.1 0.1 1 10 489 498 489 503 0.86 11 18 0.099 9.6 8.3 0.8 2 23 572 592 572 592 0.97 12 18 4.7 4.5e+02 3.1 0.1 1 10 598 607 598 612 0.86 13 18 0.099 9.6 8.3 0.8 2 23 681 701 681 701 0.97 14 18 0.00055 0.054 15.4 1.0 1 21 707 727 707 732 0.94 15 18 0.0021 0.2 13.6 0.3 1 23 740 763 740 763 0.94 16 18 0.00012 0.012 17.5 0.2 1 23 769 792 769 792 0.97 17 18 0.00014 0.013 17.3 0.7 1 23 802 824 802 824 0.94 18 18 6.5e-05 0.0063 18.4 1.4 2 23 831 853 830 853 0.96
Sequence Information
- Coding Sequence
- ATGGCGACTCAGCCCAAGATAGAAGCGGTGATCATCTCGCAGCCAGTCAAAACTGTCAGGGTGTCTCAACCCTCGAAGGAGGAGAAGGCTGCACACAAACTAAAGTACTTTACCGAGTACATGAGCGAAACTGAAATGCTGGCGTCCAGAGAAGAAGCGAAGGAGAAAGTGCAATATGCCAGCTCGGTGTACAAATGTGAGCTCTGCATCATAGGATTTTACACGCAGCAACAAGTTGAAGACCATTTCGTATCAGATCACAGAGCGAAACCGGGCTATTCCCCCTGCAAGGTCTGCTACGTGTACGTGGAAGAGTCGAAACTCCAGGCCCACATCCAGCAGCACTACGCGCGCCACATCTGCAAGCTGTGCGGCCACAGCGAGCGGCTGCTGGCCGCCATCACCGGCCACGTCAACACGCACATGAGCAAGGCGCCGCCGTCGGCGCTGATCAATATAGGGGACAGCCAGAAaaagAGTCGAAAGAAAAAGGATCCTCCATCCAATCCGCCGAAACCGGGTGATCTCCGCAAACTACTGTCCAAGACCACTATAGAAGGCTACCAGTGTCTCGAGTGTGATATGTTTttcaaAAACTCCCGCGCCCGTAAGAACCACGTGGCCCGTTTCCATAGAGAAGGCTTGCAGTGTGACCACTGCAAAAAACGATTCGTTAATCGGACTACGCTCGCAACACATTTGAGACTGCACGAAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCAGCTCCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATAGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCAGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGGTGACGTATGTGCAGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGACTGCACGGAGGCCCGCTGCCGAAGGAAGAGTGCCCGGTCTGCCACAAGATGGTGCGCGTGATACAACTCAAGTACCACATACAGCGGCACCAGAACAAGAGCCGCTACGAGTGCCTCGACTGCAACAAGATATTCTCCCACCTAGCCACGTACCAAGCCCATCTGAAATACTCCAGAGCACACGCCTCTGACCAGATATTCAAGTTCCCGTGCCCGATGTGTAATAAGGGGTACCCAACTAAGGAGGCGATGCAGGATCACTTCAACTATCAACATCTCGGCAAGACTTCACACAAGTGTCCCATGTGCGATAAGCCGATAGCGTCGCGCGCCAACGTGGAGAAACATATGATGCGGGTCCACGGGGAGAAGAAGGAGAAACCGAGGAACCACGTCTGCCAGATATGCAGGAAGGCTTTCACTGATAAAAAGGCCCTGAACCAGCACGAAGTGATCCACTCGGGCGCACGACCACTAACCTGCGACATATGCCAGCAAAGCTTTAAGCAGAAAGCTTCGCTGTACACGCACCGGAAACGGGTGCACAAGGTCTTCCCCGCTAAGAAACAAGTCGAATTCATGGACGTCAAGCATTAG
- Protein Sequence
- MATQPKIEAVIISQPVKTVRVSQPSKEEKAAHKLKYFTEYMSETEMLASREEAKEKVQYASSVYKCELCIIGFYTQQQVEDHFVSDHRAKPGYSPCKVCYVYVEESKLQAHIQQHYARHICKLCGHSERLLAAITGHVNTHMSKAPPSALINIGDSQKKSRKKKDPPSNPPKPGDLRKLLSKTTIEGYQCLECDMFFKNSRARKNHVARFHREGLQCDHCKKRFVNRTTLATHLRLHEGPLPKEECPVCHKMVRVIQLKYHIQRHQNKSRYECLDCNKVTYVQTARRPAAEGRVPGLPQDGARDTTQVPHTAAPEQEPLRVPRLQQGDVCADCTEARCRRKSARLHGGPLPKEECPVCHKMVRVIQLKYHIQRHQNKSRYECLDCNKVTYVQTARRPAAEGRVPGLPQDSARDTTQVPHTAAPEQEPLRVPRLQQGDVCADCTEARCRRKSARLHGGPLPKEECPVCHKMVRVIQLKYHIQRHQNKSRYECLDCNKVTYVQTARRPAAEGRVPGLPQDGARDTTQVPHTAAPEQEPLRVPRLQQGDVCADCTEARCRRKSARLHGGPLPKEECPVCHKMVRVIQLKYHIQRHQNKSRYECLDCNKVTYVQTARRPAAEGRVPGLPQDGARDTTQVPHTAAPEQEPLRVPRLQQGDVCADCTEARCRRKSARLHGGPLPKEECPVCHKMVRVIQLKYHIQRHQNKSRYECLDCNKIFSHLATYQAHLKYSRAHASDQIFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTSHKCPMCDKPIASRANVEKHMMRVHGEKKEKPRNHVCQICRKAFTDKKALNQHEVIHSGARPLTCDICQQSFKQKASLYTHRKRVHKVFPAKKQVEFMDVKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -