Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010001230.1:80239-87858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0049 0.48 12.5 2.1 1 23 256 279 256 279 0.98

2 10 6.4 6.2e+02 2.6 0.1 2 23 306 328 305 328 0.90

3 10 0.00037 0.036 16.0 0.4 2 23 350 371 349 371 0.97

4 10 0.029 2.8 10.0 0.8 1 23 375 397 375 397 0.94

5 10 0.019 1.9 10.6 3.5 1 23 402 425 402 425 0.92

6 10 0.21 20 7.3 1.1 2 23 435 457 434 457 0.92

7 10 0.00026 0.026 16.4 1.0 2 23 464 486 463 486 0.96

8 10 0.0044 0.43 12.6 1.4 1 23 492 514 492 514 0.94

9 10 5e-06 0.00049 21.9 0.8 1 23 520 542 520 542 0.99

10 10 0.00039 0.038 15.9 1.3 1 23 547 570 547 570 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0049	0.48	12.5	2.1	1	23	256	279	256	279	0.98
2	10	6.4	6.2e+02	2.6	0.1	2	23	306	328	305	328	0.90
3	10	0.00037	0.036	16.0	0.4	2	23	350	371	349	371	0.97
4	10	0.029	2.8	10.0	0.8	1	23	375	397	375	397	0.94
5	10	0.019	1.9	10.6	3.5	1	23	402	425	402	425	0.92
6	10	0.21	20	7.3	1.1	2	23	435	457	434	457	0.92
7	10	0.00026	0.026	16.4	1.0	2	23	464	486	463	486	0.96
8	10	0.0044	0.43	12.6	1.4	1	23	492	514	492	514	0.94
9	10	5e-06	0.00049	21.9	0.8	1	23	520	542	520	542	0.99
10	10	0.00039	0.038	15.9	1.3	1	23	547	570	547	570	0.98

Sequence Information

Coding Sequence: ATGAGTGTCGCTAAAGGCAAGGGGCCGATTTTCGACCCGGGAGTTTGTCGGTGCTGTGGCTCCCTTAAGCGCTGCAGATTGTTGAATGCGGAATACCAGTGCATGGGCCAGAAAGAAGTCTACTCTGATATAATCATGGAATGCTTTGGGCTGTTGCTATCGCACCTGGACGACCAGCCGTCAGCGCGTCTAGTATGCGCGACGTGCGTGGCGCGCCTGCGCGAGGCGGCCGCGTTCAGAGCACAAGTGCTGCGCTGCGAGGCGGCCTTCCTACAGCTGAGGATGGGGGAGACTGAGGCCGCAGATCACCAAGCGCGTTTAGACGCGTCCGCCTTGCTGGAGGTGGAGATCAAGCCTGAGCCTCCCGACGGCAGCGACCCCGGCGACCCCCCTGACCCCGGCTCCCCGGGGCCCGACCCTGGTGATCCCGGCGACCCCGGCGGACTCCCTGAATCTGGGAAGACTGCTGACCCAAGCGGTCTTGTTACCGACGCAGCCTTAGAACAACCAGAGCGCTTGAAGTGCGAGTCCCCGGCGGACTCGGACGACGTCCCTCTTAAGCGACGCAAGCGCCGAGCGTCCCGCGGCCGCTCCACGCCCGCCAAACTACCGCCCAAGCCTCTTGACGCCGGCCTCAAGGAAGACCAAGAAGAACCCAGAATCAGTCCAGAAGACGAAGCAGAGCTAAGAAAACACCGCGCCAACGTAAAGATCCTTCTGGAATTCTCCAACGCCACACCAATCCGGTGTTTTAGTGGCGTTGGCTACAGATGCTGCTATTGCCCAGACACATATCCTAATCCTAACGACTTGAAAACGCACACATTAACGAAACACGACGTGAAAATACGTCGGGTGCTGATGCAAAGAAACCTGCTTTTTGCGTTCCTTGTTAGACTTGACGTAACTGGATTGAAGTGTCGGATATGTGAGCTAGAAATGGAATCGATAGAACGCTTAACGGAACACTTGAGAGTGACGCATGAGAAGAGATTACATACGGATGTGAAAAGTCATTTACTTCCGTTCAAGTTCAATGATGGcttaaagtgtgttgtgtgcGCGAAGGCTTTCACAAAATTTCGGAGTTTACAGGAGCACATGAACGTCCATTTTAGGAACTACATCTGCGATGATTGCGAGACTGGATATCCAACTAAAAGGATGCTAGTTCAGCATTGCAATATGCACAAAACTGGCGTTTTCAATTGCGAACACTGCCCTAAAAGCTTCAATACTGAACAGAAGAAGAAGCTTCACGAACGCTTCGTCCATGTCTACGCAACATCCAACTTTTTGAACAAATGCGGCGTCTGCCAAGAACGCTTCAAAAGCTACAGAGTCAAAGAACGTCACATGTTTCAAATCCACGGAGTTTCTAGCGCAGTAAAATGTCAAGCTTGCGAAAAGACCTTCAAAAACCAAAGACTTCTAACCATTCATGTCCAGAGGAACCATCTAATGCAGCGTCCTCACAAATGTCCCCTCTGTGACATGGCGTTTTTCGGGAAGCAGGAACTTAAGAATCATTCCGTGAAGCATACGGGTTTGAGGGAATTTCGGTGTGAGGTATGTTCGAAGGCATACGGTCGACAGAAGACACTCAGGGAGCATATGAGGATACACGAGGAGAGGAGGTTTAAATGTGAAATCTGTGGAGTAGGCTTCGTGCAACGGTGCAGTTGGAAGGGACATATGAAGTCGAAGCATAGTGAGGTGTGCTAG
Protein Sequence: MSVAKGKGPIFDPGVCRCCGSLKRCRLLNAEYQCMGQKEVYSDIIMECFGLLLSHLDDQPSARLVCATCVARLREAAAFRAQVLRCEAAFLQLRMGETEAADHQARLDASALLEVEIKPEPPDGSDPGDPPDPGSPGPDPGDPGDPGGLPESGKTADPSGLVTDAALEQPERLKCESPADSDDVPLKRRKRRASRGRSTPAKLPPKPLDAGLKEDQEEPRISPEDEAELRKHRANVKILLEFSNATPIRCFSGVGYRCCYCPDTYPNPNDLKTHTLTKHDVKIRRVLMQRNLLFAFLVRLDVTGLKCRICELEMESIERLTEHLRVTHEKRLHTDVKSHLLPFKFNDGLKCVVCAKAFTKFRSLQEHMNVHFRNYICDDCETGYPTKRMLVQHCNMHKTGVFNCEHCPKSFNTEQKKKLHERFVHVYATSNFLNKCGVCQERFKSYRVKERHMFQIHGVSSAVKCQACEKTFKNQRLLTIHVQRNHLMQRPHKCPLCDMAFFGKQELKNHSVKHTGLREFRCEVCSKAYGRQKTLREHMRIHEERRFKCEICGVGFVQRCSWKGHMKSKHSEVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00657716;
90% Identity: iTF_00657716;
80% Identity: -