Edem027097.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000500.1:268986-290131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3 2.2e+02 4.1 0.3 1 23 312 334 312 334 0.91 2 9 0.0022 0.22 13.5 1.1 3 23 407 427 405 427 0.96 3 9 0.00032 0.032 16.2 1.0 2 23 431 452 431 452 0.97 4 9 0.00017 0.017 17.0 0.3 1 23 459 481 459 481 0.96 5 9 0.074 7.2 8.7 2.6 3 23 491 513 490 513 0.92 6 9 0.00033 0.032 16.1 0.3 1 23 521 543 521 543 0.96 7 9 0.00066 0.064 15.2 2.3 1 23 548 571 548 571 0.96 8 9 1.1e-05 0.001 20.8 0.2 3 23 582 602 581 602 0.98 9 9 0.0041 0.4 12.7 0.8 1 23 608 631 608 631 0.96
Sequence Information
- Coding Sequence
- ATGTCGGCAACGTTGGACGGTAGACAGGAGGAATTGCTGATAAGAAAATCAATAATTGATGATACCATCGATGAAAGAAACGATGGGAGTTTTAAACTCCACCGAGACTCGGTTCCGGCCCACCTTCTTTACACCACCTTCTTTAATTCCCACTACACTTTTGTTGTGAAGAAGCTGGCCAAACTTGATTTGGTTGAGctaAAAAAGACGGATAGGGTTTGCTGGGAGTGTCGGCACACACTGCGGAAGATTATTGCCTTCAAGAAGAAGGCATGGAAGGCACAGGCCTGGTTAAACGCTGCAGGAAAAGGCCAACATTCTGACATCATCTGTCTATCATCACTTGACATATCAATGGGCATATTCCTCAATGTCACCGACCCTGGACTGACCACCCGCTCCGATTGCTCACCAGAACCAGTGTTTGTGTCTGTGAAACAGGAAGTTAATGAAGATGAGATATGCAGTGATGAAAGAGTCGGCAGCGGTGAAACCAGTGTGGAGAGAGATAGAATGAAAGTTAAGGAAGAGGAGCTAGATGTACTTGTCTTTAAAATACCCAAACCAACAAAACGAAAAGCACCCGCATCGACGGACATCTTGACAGAAATGCCGGCCCCTCGCTCTGAACACAGTGCACCCGTGGCAGCCTCGGCGACCCCACCATCAGCATCAACACGACACCGCATAGTTAACCCGTCCAAACCAAAAGCACCCCCACCAATAGAGGCCCCAATTGTTGATCCACTCAATTTATACACAGAGGAGAGCTTGAGTGAAGACGGATTGTTAGAATGGTGgcagaagaaaaagaaaatgaaGTATTACACGCAGAGCATCCCTCTAGAGCGGTGTGTCAAATGTGTGCAGCCTTTCGATGGTCAGCCGATCTTAAAAGCTCACGCCAACAAGCATACAGAGATTTACGGCGACTTTGAGTGCGACATCTGCACGCTGCGACTGATCGACGAAAGAGAGCTGGAGTTTCACAAGAAACTGCATTACAGGTCGCGCTTGATGGTGGTTTTACATCATTTTTATAAGCCTAAAGCCGGGCATGTACCTAGGCGCCGCGCCGCTTGTCTCGGTGACAAATGGATGAGTTCAAATGAATGGACAATACTGAAGTGTCGATACTGTGACTTCACGTGGGACGACGTGAATAGTATTCGGCAGCACTGCAGCGACCTGCACGGCGTGAAACAGACCGTGTGGGACTGCGAACAGTGTCAGAAACAGTTCGGGTCGGCAAAGAAGTTCAATTCGCACTTGCGTAACCACCGGCGCGAGCAGTGTCCGCAGTGCGGGAAGTCTGTAACCGCGTGTAACCTCCAAAGACATATAATGATCCAGCACCGCGGCGGGAAGCCGTGGCACGCGTGCGGGGAGTGCGGGGGGAGGTTCCGCGGGGAGGACGGACTCAAACTGCACATGAGGACGCACGGCACTGAGGTGGATCCGGCGGCGTTCTGCGCAGAGTGCCAGATTCAGTTCCGGGATAAGTGCCGGCTCCTTGTTCACATGAGGTCGAACAAACACTCAGACGCGTCGGACTACCGGTTCGAATGCGAAGAGTGCGGCAGGAAGTTTGTAAAACGTGCTCGTCTGCGGGAACACGAGGGGACGCACGCCGGCGTCGCGTACCCGTGCGACCAGTGTGATAagTCGTTCAACTCGCGGCGGTCACGCACCACGCACGTGAAAAACAAGCACGAGGGCCGAGCGGCGCCGCGCGACAAGCTATGCGACTACTGCGGCCGCGGCTTCGCGAGAAAGGCGCAGTTGTCGTCGCATATAAACTCGCACACAGGCGCGCGCCCGTTCGTGTGCACGCTGTGCGGGGCGGACTTCGGGCACAAGAGCGCTCTCTACCTGCACGGCCGGTACAAGCACAAGATACAGAAGATAAAGAAACCGGAGACAGTTACCAAGAATAACAGTGTTACAGACAGTGGAAATAACAGTGAACAAGATGGCAGCGGGAAAAACAGTGTGGAAACTTAA
- Protein Sequence
- MSATLDGRQEELLIRKSIIDDTIDERNDGSFKLHRDSVPAHLLYTTFFNSHYTFVVKKLAKLDLVELKKTDRVCWECRHTLRKIIAFKKKAWKAQAWLNAAGKGQHSDIICLSSLDISMGIFLNVTDPGLTTRSDCSPEPVFVSVKQEVNEDEICSDERVGSGETSVERDRMKVKEEELDVLVFKIPKPTKRKAPASTDILTEMPAPRSEHSAPVAASATPPSASTRHRIVNPSKPKAPPPIEAPIVDPLNLYTEESLSEDGLLEWWQKKKKMKYYTQSIPLERCVKCVQPFDGQPILKAHANKHTEIYGDFECDICTLRLIDERELEFHKKLHYRSRLMVVLHHFYKPKAGHVPRRRAACLGDKWMSSNEWTILKCRYCDFTWDDVNSIRQHCSDLHGVKQTVWDCEQCQKQFGSAKKFNSHLRNHRREQCPQCGKSVTACNLQRHIMIQHRGGKPWHACGECGGRFRGEDGLKLHMRTHGTEVDPAAFCAECQIQFRDKCRLLVHMRSNKHSDASDYRFECEECGRKFVKRARLREHEGTHAGVAYPCDQCDKSFNSRRSRTTHVKNKHEGRAAPRDKLCDYCGRGFARKAQLSSHINSHTGARPFVCTLCGADFGHKSALYLHGRYKHKIQKIKKPETVTKNNSVTDSGNNSEQDGSGKNSVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -