Edem014000.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000227.1:467283-471132[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.12 14.3 3.4 1 23 271 293 271 293 0.98 2 12 1.4 1.4e+02 4.7 0.2 5 14 389 398 387 402 0.86 3 12 0.00053 0.051 15.5 3.4 1 23 416 439 416 439 0.97 4 12 0.0002 0.019 16.9 0.5 1 23 444 466 444 466 0.98 5 12 0.031 3 9.9 1.7 2 23 488 510 487 510 0.93 6 12 0.01 1 11.4 1.9 1 23 514 537 514 537 0.97 7 12 0.2 20 7.4 0.3 2 23 560 582 559 582 0.93 8 12 8.5e-06 0.00083 21.1 2.9 1 23 592 614 592 615 0.96 9 12 0.006 0.58 12.2 1.4 2 23 631 652 630 652 0.96 10 12 0.014 1.3 11.0 0.6 1 23 658 680 658 680 0.96 11 12 1.1 1.1e+02 5.1 2.4 1 20 686 705 686 710 0.91 12 12 0.0038 0.37 12.8 0.2 2 23 756 777 756 777 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTAGAAAATACCCTCCAAACAGACTCAAATTACCAATTAACAGATAGTGTAACTATAAAGGAGGAGTTAGACAATAACATAGTCATAGAAGAACACAATCTAGAATTACAATTGAAAACCGAAACTGAAGAACCCTACCACCAAGAAGTGAAAGAAGAATTGGAACCAGTGAATTTTAGGAAATACATAGAGAATAAGATATTAGAAGAATTTAAAGTACAAAGTGAAGTGGATTCAATACTACCGGAGCCTGAGGAAGAGTCAAATGTGAAGCAGGAATGTTTGGAGGATGACGCCATGATTTCATATGACTTCCCGAGCTTTGATGATGGGAGTGTGGGGACGCAGAGCATGGAGACGGCAGACAGCATGGATAGCAACGATGCAGCGGCGCTCGGGAACGTGGAGACTTGTCTGCAAGAAGACAGTGTCAGTGTTAAATATGAGAATGATGAATATGATGACCCTCATCTAAACGTGAAAGAAGAAAGAGACTTGACAGTTACGGAAACacatttaatatcaaacaaagtGATCAACACAACTTCAACAATCACTAATCCGCAGGACGGACTCATCAAATCGCAAACCACCAAAACACTAGTCATGGAAATCCATCCCATGTCACACACTGGCAGTGTTCCCTTGTCTAAAATAGGTAACCCAGAGGAAATTCTATCCACCAATGAGGATTATGAAGACTTTCAATTAAATTCTATCACGGGAAACGAATTATCATTGGAACAGGAGGCCTACGGACTTTTGAAAGCAAAGAAAAGAAGAACCGCCGATGTAGAAAAGTCTCACCAATGCCCTAAATGCGTGAACACCTACAGAACCGCTCACACTCTTCAAAAGCATTTATTAGTGCATGCCACCATAGAGAAACGAGCTAAAGGTGTCATACAGGGGCAGAAAACTCGGCGCCTGAATAGGCTCAAAGCGGAGAGGCAATACCGTGTGGAATCGAAGAAAATAGAACCCAGGaaggaaaaaaagaaaatagaaCCGAAGaaggaaaaaaagaaaatagaaCCAAAGAAcgaaaaaaagaaaatagaaCTGAAAAAGGAAGAAAAGAAAATAGAacccaaaaatgaaaaaaataaaattaagaaaaaacatGCTGAAATTGTTAAAAAGGAAGGCTATGAATGCACTTGTGGAAAGGTTTTCAGGAGGAGAAGTCGCATGGAAACGTGTCTACGGTCACACAACTTGTTTGCTGAAGTCAAAACCTACCCCTGCCAAACTTGCGCGAAGTGTTTTAAAGACAAAACTGAGCTCGCATTGCACAGAAAACGATTCCATATCAAAAAGAAATTCCCCTGTAAATTTTGCCCCACAGACTACAACACGCCTAAAGAACTCTTCAGGCATTTACAAGTACACCAAAAAGTTCAACTGATGGAATACAAGGTAATCTCTGAAAACATGAAAGGTAAGAAGAAGATGCGGTGTTTCATGTGCTCCAAAATGTGTACGGAACTATCAGACTTAAAGTCACATGTTATGGACGATCATAAAGAGCCGTACATCTGTCAGCATTGTCAGCAAACGTTCCCTAAAATAATCGACTTCGCAAATCATACGAAAACATCACACCCTGAGGTCGAAGGGCAATCAGTCTTAGACGTCCTTGAAGCGTTCTCAAAACTGGTACAAGCATGGAAATGCGAAGAATGCGAACTTCAATTTCACGAAGCAGATAAACTAGCCATGCATCAGATAGAAAAACATAGTCGCGAAGTGAAATCAGAGCTGCAATTCCAATGTAACGATTGCCGAAGAGTTTTCATCACGCAGAAAGGTTTGACATCACATCGTAGAGTCCACCACAGTACGGAAGAACCCGAAGTCAGTGAGGTCGTAGAACAGGGCATAATGTGTCTAGAATGCAGAAAAATATGCAAGGATATGAACGCCTTAACATCACACATGAGGCTACACTCCCCTGAGCGGAAATATCCCTGCAAATTCTGCGATTTCCGCTTCGCAACGCCTGAAAAGCGGAAATCGCATGCGGAAATACACACAGGCGATATGAAGTACGTCTGTTTCATCTGTGAGTACCAGTGCACGTCGGAAAATAGGCTAAAGCAGCACAAAGTGTCGGCGAAGCATTCGAACATGAAGGAGTACCTTCTGACTGGTAAGATCAACAACGAATCTACTTCTCAACAAGAGAAGATCAAAGTATCTCAAAGTAAAAGtgttaagaaaaagaaaaaagaggtATCTAGTCCGGAAATTGAGGCTACCTGTGAGGTCTGTGGTGAGAAGTTTCCGAGTGAAGAGACAATGTTGGAGCATAAACAGACTCATCCGTTCATAGAGTTCCCTAACGAGGATACGCCTAGTAGGATATTTTTTAAGTAG
- Protein Sequence
- MALENTLQTDSNYQLTDSVTIKEELDNNIVIEEHNLELQLKTETEEPYHQEVKEELEPVNFRKYIENKILEEFKVQSEVDSILPEPEEESNVKQECLEDDAMISYDFPSFDDGSVGTQSMETADSMDSNDAAALGNVETCLQEDSVSVKYENDEYDDPHLNVKEERDLTVTETHLISNKVINTTSTITNPQDGLIKSQTTKTLVMEIHPMSHTGSVPLSKIGNPEEILSTNEDYEDFQLNSITGNELSLEQEAYGLLKAKKRRTADVEKSHQCPKCVNTYRTAHTLQKHLLVHATIEKRAKGVIQGQKTRRLNRLKAERQYRVESKKIEPRKEKKKIEPKKEKKKIEPKNEKKKIELKKEEKKIEPKNEKNKIKKKHAEIVKKEGYECTCGKVFRRRSRMETCLRSHNLFAEVKTYPCQTCAKCFKDKTELALHRKRFHIKKKFPCKFCPTDYNTPKELFRHLQVHQKVQLMEYKVISENMKGKKKMRCFMCSKMCTELSDLKSHVMDDHKEPYICQHCQQTFPKIIDFANHTKTSHPEVEGQSVLDVLEAFSKLVQAWKCEECELQFHEADKLAMHQIEKHSREVKSELQFQCNDCRRVFITQKGLTSHRRVHHSTEEPEVSEVVEQGIMCLECRKICKDMNALTSHMRLHSPERKYPCKFCDFRFATPEKRKSHAEIHTGDMKYVCFICEYQCTSENRLKQHKVSAKHSNMKEYLLTGKINNESTSQQEKIKVSQSKSVKKKKKEVSSPEIEATCEVCGEKFPSEETMLEHKQTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289988;
- 90% Identity
- iTF_00660654; iTF_00656514; iTF_00657650;
- 80% Identity
- -