Edem024614.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- Znf516
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000448.1:163274-178671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0037 0.36 12.8 1.5 1 23 456 480 456 480 0.84 2 11 0.00046 0.045 15.7 8.5 1 23 486 508 486 508 0.98 3 11 0.0059 0.57 12.2 4.7 1 20 514 533 514 536 0.94 4 11 0.0014 0.14 14.2 5.1 1 23 542 564 542 564 0.96 5 11 0.00019 0.019 16.9 8.5 1 23 570 592 570 592 0.98 6 11 0.001 0.098 14.6 3.7 1 23 598 621 598 621 0.92 7 11 0.0009 0.087 14.8 9.8 1 23 627 649 627 649 0.98 8 11 0.074 7.2 8.7 2.8 1 23 655 677 655 677 0.98 9 11 0.0005 0.049 15.6 8.7 1 23 683 705 683 705 0.98 10 11 0.00054 0.053 15.5 4.1 1 23 711 734 711 734 0.95 11 11 0.0018 0.17 13.8 9.7 1 23 740 762 740 762 0.98
Sequence Information
- Coding Sequence
- ATGTCGGTAGACACATTGTGTGTGAAGATGGAGGTGGAGGAGGTGTGTGTGAAAGAGGAGGCTGAGGAGATTGGTCAAAATGAGGAGACGGGGGCACATGTAAAAGAGGAGGCGGAGTGTGAGGACAACCCAGACTTGTGTGCCCTGTATGTGGGCCACCAGGTCAAGGACGAGCTTGTGCTGGGCCCCGTGGAGCTGCACCGGCCTCGTGTGCCTTCTGCTCCTCCAGCTGCTTCGTCGCATTATTTGTCGTGTCGTTTTCATGATGGTTCTTGCCTCGCTAGCAAGGATAGTCATCGCGTTTCGTCGTTGTCTCTGGACACCAATATTCGGCGGTTTAGGGAGGTAGTAAATGTCGTGACTCCTAAATCGGCTATTTCGTCGAAAGCTGATTTGTCGTGTGACAGCCTTATGGGTGCTGCATGTTTTCGTGATCCTGAAGGGATGATGGCTGTGCCATTAACCTTCGACAACCGCCAGGATAAGCCCTGGTTTTCGAACTCGTCGGATTCCGACTTACACTCGGAACAATTTCGTATCTTTGAGGATGTTCAGTACGTCTCACTGAACATATTAGGTCTACGGTGGTTACCTAAACCTAACGCATTGCGCTCAATGCTTTCGTATATTGCGCGGATTTTCTATCCTTCGGGATTTCTTTCGCTTTTCGTTTTCATGGCTAAATGTTTAATGCAGCGTTTATGGATCTCTGGACTGCATTGGGATGATGATGTCCCAGAACCTATCGCTGGAGAGTGGCTTAAATTGAATCCTCAGTTGTCGTGCCTGAGCTCACTCTCTATTCCTCGCAGAATTATCTATCCATTTCGCCCTTGTCGCGCAAATCCTCGTGGCTTACTACCAGCTGATCTAGCGCGGCGTGAATTATGGTGGGCGGGACCCGCTTGGTTGCCGCGTCCCGAAGAAGATTTTCCGAGACATCTCACTCAAGGTGTCGGAGCTGCACTCGAGGAGGAAAAGGTTCTGACCTTCGAACAAATTTTGTCTCGTCTTTCGTCGTTTCGTCGTATCGTCAATATGTTGGCGTATTGTTCTCGTTATCTTAATAACCTGAAGAATCCCTTCCATAGAGTGAAGAAAAGGACTCCGCTGGAGGAAACCAACTCTGTCATTCTATTTCTCGTTAAACATGTCCAGGAGCATGTTTCCTCGACTGAATTTCGAATGATCACCAGAGCGGCACCGAGCGGCGCAGAGGAGGCTCGCGGGCGGGCTTGCTCGGTCAGGCTGGAGCGCCTGCTCGTGGACGCGGAGCGGCGCTCGTGCCGGGTCGGGCTCCGCACGTACCCGCTGCGGCGCACGCGCGACCCACGCGACGACGCCGACACGTCGAGCAGCGCGACCTACCAGTGTGACGAGTGTGGTGAAGTTTTCAGATATAATCAAAAGGCAAGTTTAAAAATTCACGAGAGACGACACACTGGAGAAAAACCATTTAAATGTAGCTACTGTGACTACAAATGCAGTCAGAAGCCACATTTAAAAAAGCACCAGAGCCGACACACTGGAGATAAACCATTTAAATGTAGCCAGTGTGACTACAAGTGCAGTCGGAAGGACCAATTAGAAAGTCACAAGTGGAGACACACAGAAGAGAAACCATTTAAATGTAGCCACTGTGACTACAAGTGCAGCCGAAAGGAAGCTTTAAAAAGTCACGAGATACTACACACAGGAGAAAAACCATTTAAATGTAGCCACTGTGACTACAAGTGTAGTCGGAAGGGATCTTTAAAAAGGCACCAGAGCCGCCACACAGGAGAAAAACCATTTGAATGTAGCCACTGTGACTGCAAGTTTAGTCTGAGGGCAAACTTGAAAAGGCACGAAGTGTCGATACACACGGAAGGAAAAGAATTTAAATGTAGCCACTGTGACTACAAATGCAGTCAGAAGGCACATTTAAAAAGGCACGAGAACCGACACACTGGAGAAAAACCATTTCAATGTAGCCAGTGTGACTACAAGTGCAATTGGAAGGAAGCTTTAAAAGTTCACAAGAAGATACACACTGGAGAGAAACCATTTGAATGTAGCCACTGTGACTACAAGTGTAGTCGGAAGAGATCTTTAAAAAGGCACCAGAGCCGCCACACAGGAGAAAAACCATTTGAATGTAGCCACTGTGACTGCAAGTTTAGTCTGAGGGCAAACTTGAAAAGGCACGAGTTGTCGATACACACGGAAGGAAAAGCATTTAAATGTAGCCACTGTGACTACAAATGCAGTCAGAAGGCTCATTTAAAAAGGCACGAGAGCCGACACATTGGAGAAAAACCATTTAAATTTAGCCAAAGTGTAGAAGTAGAAATAAGTGACGATGATGAAAACCATACACCAGGGAGTAGCATTCACACTCCCCCAGCCTCTCAGTGGGCTGATATCATAGGGGTGTCCGGCCCACAAGACTATACTTTTAACAAGAGCCAAGAACACACCGCCGACTAA
- Protein Sequence
- MSVDTLCVKMEVEEVCVKEEAEEIGQNEETGAHVKEEAECEDNPDLCALYVGHQVKDELVLGPVELHRPRVPSAPPAASSHYLSCRFHDGSCLASKDSHRVSSLSLDTNIRRFREVVNVVTPKSAISSKADLSCDSLMGAACFRDPEGMMAVPLTFDNRQDKPWFSNSSDSDLHSEQFRIFEDVQYVSLNILGLRWLPKPNALRSMLSYIARIFYPSGFLSLFVFMAKCLMQRLWISGLHWDDDVPEPIAGEWLKLNPQLSCLSSLSIPRRIIYPFRPCRANPRGLLPADLARRELWWAGPAWLPRPEEDFPRHLTQGVGAALEEEKVLTFEQILSRLSSFRRIVNMLAYCSRYLNNLKNPFHRVKKRTPLEETNSVILFLVKHVQEHVSSTEFRMITRAAPSGAEEARGRACSVRLERLLVDAERRSCRVGLRTYPLRRTRDPRDDADTSSSATYQCDECGEVFRYNQKASLKIHERRHTGEKPFKCSYCDYKCSQKPHLKKHQSRHTGDKPFKCSQCDYKCSRKDQLESHKWRHTEEKPFKCSHCDYKCSRKEALKSHEILHTGEKPFKCSHCDYKCSRKGSLKRHQSRHTGEKPFECSHCDCKFSLRANLKRHEVSIHTEGKEFKCSHCDYKCSQKAHLKRHENRHTGEKPFQCSQCDYKCNWKEALKVHKKIHTGEKPFECSHCDYKCSRKRSLKRHQSRHTGEKPFECSHCDCKFSLRANLKRHELSIHTEGKAFKCSHCDYKCSQKAHLKRHESRHIGEKPFKFSQSVEVEISDDDENHTPGSSIHTPPASQWADIIGVSGPQDYTFNKSQEHTAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -