Edem034575.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000720.1:161509-203333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.071 6.9 8.8 0.4 1 23 201 224 201 224 0.98 2 10 1.2 1.2e+02 4.9 0.0 2 23 232 253 231 253 0.93 3 10 0.012 1.1 11.3 1.6 1 23 257 280 257 280 0.96 4 10 0.1 9.8 8.3 5.2 2 23 286 307 285 308 0.94 5 10 5.4e-05 0.0052 18.6 0.0 1 23 311 334 311 334 0.96 6 10 0.0017 0.17 13.9 0.3 1 23 339 361 339 361 0.98 7 10 2.9 2.8e+02 3.7 0.0 3 20 370 387 369 389 0.91 8 10 0.00071 0.069 15.1 2.3 3 21 597 615 595 619 0.91 9 10 0.00065 0.063 15.2 0.0 2 23 625 646 624 646 0.96 10 10 1.4e-06 0.00013 23.6 0.5 3 23 658 678 657 678 0.97
Sequence Information
- Coding Sequence
- ATGTCCATGATAGCTTCCAGGGCTGCAGTCGGTGTGGTCCTCATGCAGCCACTGGCCGCCATGCAGGCCAGTCTCTGGAGGCGTTGTAGTTTAGCTTCGACCGTGTCAGAGCCAGCCAAGAAAGTAGTATGCTTTGAATGCCACAGTTTCCTGAAGAGGGTAGAGGTGTTCCGTCAGCAGGTCCTTCGGAGTTTCCGGAGCTTGGAAGCTGAGGAGATCGCCAcagcacaaactcaaaacccAGACAAACTTAAAAACAAGTACAACCTGAGTCACAAGAAAACCGTAAACATATATCTCCCGCCAGCAAAGTACGTCCCAGAGAAATGGCAACACCCTAGTATGCAACCACAGATAAACAAAACTGTGGTAAAAAAAGAAGTGGAGCCTATGGAACCGGCACTGCCAGTGGTGAAAATAAAGGCAGAACCAATGGACAGTGAAAAGGAGAAAGTTGAGATTGAAATTGCCCCTGCCCAACCAGAAGTGgttaaagACAAGAACACCAACGCAACAGTCCGGACGGTGACCCTGACCAAAGAACAGTTGGTTCTCGAAAGGCTAAAGCAGGCGCAGTCCCCCGCCTACCTGCAGCTACCATACCGGTGCGAGAGCTGCGTGGTCGGGTTCAACTACGAGGAGAACATCAGAGACCACATCAAGAGGAAACATGGGCCGAAGGTGGGCAGTGTGACGTGCGCCATATGCCTGGCCGTGCTGTTCCCGCCGGGCAGCCTCAACGCACACATGTTCCGACACCTCACCAGATACGAGTGCGTGAAGTGCGACAAACGCTACGCCAACTATGAGGACGCGCTCCAACACCACAAGAAGGAACACGGCGAGACGGCCCTGCGCTGCGCTGAGTGCCACTACAGTACCGAttcACCGCAGAAGTTCAGGAAACACAAGCGGCTGCATCACAAGCGGTTCACGTGCAAGGACTGCGGCGTGGTGCTCGCCACCCGGCCCAGCCTCACCAGGCACATGGCCGTGCTCCACAACAAGCGGCTGTACCGCTGCGTGCACTGCTCCATCACGTACACGGACGGCGCGCTGTTCGCGgcgcacatgcgcgcgcacggcgcggcggcggcgcgcgcggcgtgcggcgcgtgcggcgtGCAGTTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAATTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAAGTGAGTATGCTTGGCAGTTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAATTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAAGTGAGTATGCTTGGCAGTTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAATTCAAGGCCTGGCACGCGTATAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAAGTGAGTATGCTTGGCAGTTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAATTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAAGTGAGTATGCTTGGCAGTTCAAGGCCTGGCACGCGTACAACGCGCACGTGCTGTACAGCACCGCGCACTCTAACCAGCGCAAgatAGCCTGCCACCACTGCGGCATGAAGTTCGCGACGGCGACGCACCTGCGCATGCACGTGCAGTTCAGCGACCACCCCAAGCAGCGCTGGCCCTGCCCCGACTGCCCCAAGGAGTTCGCAGTAGAGGCCGAGATGAAACAGCATCGCAATATACATAAACAGCAGCGGCTAAAGTCAACCGACAGGATATGCGACTACTGCGGCCGCGTTTATACTAGTCGAGAGCACCTGATCCGCCATATCCAGGTCCACGTGCAGAAGCGGCAGAAGGCGAAAGACGCCAAAACCAAGCCCTACAAgaggaaataa
- Protein Sequence
- MSMIASRAAVGVVLMQPLAAMQASLWRRCSLASTVSEPAKKVVCFECHSFLKRVEVFRQQVLRSFRSLEAEEIATAQTQNPDKLKNKYNLSHKKTVNIYLPPAKYVPEKWQHPSMQPQINKTVVKKEVEPMEPALPVVKIKAEPMDSEKEKVEIEIAPAQPEVVKDKNTNATVRTVTLTKEQLVLERLKQAQSPAYLQLPYRCESCVVGFNYEENIRDHIKRKHGPKVGSVTCAICLAVLFPPGSLNAHMFRHLTRYECVKCDKRYANYEDALQHHKKEHGETALRCAECHYSTDSPQKFRKHKRLHHKRFTCKDCGVVLATRPSLTRHMAVLHNKRLYRCVHCSITYTDGALFAAHMRAHGAAAARAACGACGVQFKAWHAYNAHVLYSTAHSNQRNSRPGTRTTRTCCTAPRTLTSASEYAWQFKAWHAYNAHVLYSTAHSNQRNSRPGTRTTRTCCTAPRTLTSASEYAWQFKAWHAYNAHVLYSTAHSNQRNSRPGTRITRTCCTAPRTLTSASEYAWQFKAWHAYNAHVLYSTAHSNQRNSRPGTRTTRTCCTAPRTLTSASEYAWQFKAWHAYNAHVLYSTAHSNQRKIACHHCGMKFATATHLRMHVQFSDHPKQRWPCPDCPKEFAVEAEMKQHRNIHKQQRLKSTDRICDYCGRVYTSREHLIRHIQVHVQKRQKAKDAKTKPYKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -